Twinscan
From BioPerl
A prediction program by Ian Korf, Paul Flicek, and Michael Brent which builds on Genscan and incorporates sequence homology into the gene predictions.
References
- Korf I, Flicek P, Duan D, and Brent MR. Integrating genomic homology into gene structure prediction. Bioinformatics 2001; 17 Suppl 1 S140-8. pmid:11473003.
- Flicek P, Keibler E, Hu P, Korf I, and Brent MR. Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map. Genome Res 2003 Jan; 13(1) 46-54. doi:10.1101/gr.830003 pmid:12529305.
- Wang M, Buhler J, and Brent MR. The effects of evolutionary distance on TWINSCAN, an algorithm for pair-wise comparative gene prediction. Cold Spring Harb Symp Quant Biol 2003; 68 125-30. pmid:15338610.
- Tenney AE, Brown RH, Vaske C, Lodge JK, Doering TL, and Brent MR. Gene prediction and verification in a compact genome with numerous small introns. Genome Res 2004 Nov; 14(11) 2330-5. doi:10.1101/gr.2816704 pmid:15479946.
