Tracking Git commits

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Core commits
RSS
Recent Commits to bioperl-live:master split Bio-Biblio into a separate distribution Merge pull request #53 from bvaisvil/master typo, removed -> Per: http://www.bioperl.org/wiki/Bioperl_Best_Practices and Merge pull request #52 from fjossandon/master Merge branch 'master' of github.com:bioperl/bioperl-live Bio::AlignIO::fasta was not always using />\s*(\S+)/ as its primary id. Modified it back to the simplest expected behaviour Fix for Bug #3251, plus fixed a couple of regular expressions. Also added tests. Revert "Fixed no-hit blast bug and faulty regexs, added tests" Fixed no-hit blast bug and faulty regexs, added tests Bio::Perl - fix indentation (remove tabs, and weird 3 spaces indentation) updating Changes file Merge branch 'topic/bug3302' Don't use a separate default scalar when there's a hash with default key follow perl recommendations: fix indentation (remove tabs, and weird 3 spaces indentation) follow perl recommendations: use until instead of while(1){last if...} fix indentation (remove tabs, 3 space and 2 space indentation) fixing bug 3302 and adding test

Run commits
RSS
Recent Commits to bioperl-run:master POD update More POD updates Test refresh POD updates and insignificant code changes Consistent indentation Fixed synopsis deleted extra log files Merge pull request #10 from bioperl/daisieh-adding_batchfile merging adding_batchfile Added version checking of Hyphy, updated create_wrapper based on version Merge pull request #8 from daisieh/bug_3381_2 Merge pull request #6 from daisieh/bug_3380 Better, cleaner warnings in tests. Fixes for bug 3381. Revert "Fixes for bug 3381" Fixes for bug 3381 Versioning added Rm Id lines Correct params and switches Correct params and switches

Ext commits
RSS
Recent Commits to bioperl-ext:master moved Bio::Tools::HMM and Bio::Ext::HMM into their own distro, got them compiling cleanly. tests not passing yet use UPPPER_TOL to catch the case when the expectation maximization step fixed Vitebi typo Fixed the typemap and also a memory bug in viterbi function in HMM.xs adding FEEDBACK:Support section to pod Bump to 1.007 (similar to trunk) ext patches (courtesy Thomas Jahns) get rid of some unended comment warnings from C compiler -fPIC needed for lib construction include errno definition removed DEBUG=1 IUPAC DNA support IUPAC DNA test case Add some helper code and tests to demo evalue oddities (bug 1857); casting issue? Add cast to correct pointer type (get rid of warnings) update version to last bioperl release bug 2329 bug 2074/2329 Removed Aaron's old test script (now in t/staden_read.t). Do we modify master ext makefile to account for this? bug 2074

Bioperl-DB (BioSQL)
RSS
Recent Commits to bioperl-db:master updates since last release update skipped files add MANIFEST.SKIP buzgilla -> redmine [RT 44466] remove corba-related scripts, now obsolete squash perl 5.12 warning ignore conf file add minimal .gitignore file weird duplication removed committing patch for bug #2958 test commit to check SVN::Notify Build.PL now checks for DBD drivers and attempts to DTRT remove MANIFEST.SKIP update Changes fix empty POD section some pod cleaning main trunk version is wrong * 02species.t now compared to similarly behaving instance, also creates comparable array [bug 2092] moved Bio into lib to make Module::Build installation more normal