Tracking Git commits

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You can track code development in BioPerl by RSS feeds or the bioperl-guts Mailing list. There is a list of all BioPerl RSS feeds as well.


Core commits
RSS

Recent Commits to bioperl-live:master

split Bio-Biblio into a separate distribution
Merge pull request #53 from bvaisvil/master
typo, removed ->
Per: http://www.bioperl.org/wiki/Bioperl_Best_Practices and
Merge pull request #52 from fjossandon/master
Merge branch 'master' of github.com:bioperl/bioperl-live
Bio::AlignIO::fasta was not always using />\s*(\S+)/ as its primary id. Modified it back to the simplest expected behaviour
Fix for Bug #3251, plus fixed a couple of regular expressions. Also added tests.
Revert "Fixed no-hit blast bug and faulty regexs, added tests"
Fixed no-hit blast bug and faulty regexs, added tests
Bio::Perl - fix indentation (remove tabs, and weird 3 spaces indentation)
updating Changes file
Merge branch 'topic/bug3302'
Don't use a separate default scalar when there's a hash with default key
follow perl recommendations:
fix indentation (remove tabs, and weird 3 spaces indentation)
follow perl recommendations:
use until instead of while(1){last if...}
fix indentation (remove tabs, 3 space and 2 space indentation)
fixing bug 3302 and adding test
Run commits
RSS

Recent Commits to bioperl-run:master

POD update
More POD updates
Test refresh
POD updates and insignificant code changes
Consistent indentation
Fixed synopsis
deleted extra log files
Merge pull request #10 from bioperl/daisieh-adding_batchfile
merging adding_batchfile
Added version checking of Hyphy, updated create_wrapper based on version
Merge pull request #8 from daisieh/bug_3381_2
Merge pull request #6 from daisieh/bug_3380
Better, cleaner warnings in tests.
Fixes for bug 3381.
Revert "Fixes for bug 3381"
Fixes for bug 3381
Versioning added
Rm Id lines
Correct params and switches
Correct params and switches
Ext commits
RSS

Recent Commits to bioperl-ext:master

moved Bio::Tools::HMM and Bio::Ext::HMM into their own distro, got them compiling cleanly. tests not passing yet
use UPPPER_TOL to catch the case when the expectation maximization step
fixed Vitebi typo
Fixed the typemap and also a memory bug in viterbi function in HMM.xs
adding FEEDBACK:Support section to pod
Bump to 1.007 (similar to trunk)
ext patches (courtesy Thomas Jahns)
get rid of some unended comment warnings from C compiler
-fPIC needed for lib construction
include errno definition
removed DEBUG=1
IUPAC DNA support
IUPAC DNA test case
Add some helper code and tests to demo evalue oddities (bug 1857); casting issue?
Add cast to correct pointer type (get rid of warnings)
update version to last bioperl release
bug 2329
bug 2074/2329
Removed Aaron's old test script (now in t/staden_read.t). Do we modify master ext makefile to account for this?
bug 2074
Bioperl-DB (BioSQL)
RSS

Recent Commits to bioperl-db:master

updates since last release
update skipped files
add MANIFEST.SKIP
buzgilla -> redmine
[RT 44466] remove corba-related scripts, now obsolete
squash perl 5.12 warning
ignore conf file
add minimal .gitignore file
weird duplication removed
committing patch for bug #2958
test commit to check SVN::Notify
Build.PL now checks for DBD drivers and attempts to DTRT
remove MANIFEST.SKIP
update Changes
fix empty POD section
some pod cleaning
main trunk version is wrong
* 02species.t now compared to similarly behaving instance, also creates comparable array
[bug 2092]
moved Bio into lib to make Module::Build installation more normal
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