Talk:Tricking the perl regex engine to get suboptimal matches
From BioPerl
Example input file?
When I try to use bioperl-live/t/data/testaln.fasta as my input I get this error. --Jhannah 21:05, 22 February 2009 (UTC)
------------- EXCEPTION ------------- MSG: This alignment has only 411 residues. Slice start [3713] is too big. STACK Bio::SimpleAlign::slice /Users/jhannah/src/bioperl-live/Bio/SimpleAlign.pm:1080 STACK toplevel j.pl:26 -------------------------------------
And then, even if feed it a very good FASTA alignment and comment out the entire for my $match (@matches) { block, I wind up with
Can't call method "next_aln" on an undefined value at j2.pl line 21.
So somehow $c =~ m//xig is undef'ing $in?
I tried these:
This is perl, v5.10.0 built for darwin-2level This is perl, v5.8.8 built for i486-linux-gnu-thread-multi This is perl, v5.10.0 built for i686-linux
- The alignment you are using has a very poor consensus_string at 100% identity (I get no output as a result), but it doesn't fail for me. Not sure what is going on. Following is the example I used. Maybe post your version of the script? --Chris Fields 23:11, 22 February 2009 (UTC)
- Really? I wonder what my problem is? I just tried again with your file, no luck. (1) bioperl-live r15558. (2) copy-paste the script from the wiki. (3) Change $file to $ARGV[0]. (4) Save your alignment below as cjfields.fasta. My results: --Jhannah 23:44, 22 February 2009 (UTC)
This is perl, v5.8.8 built for i486-linux-gnu-thread-multi ------------- EXCEPTION: Bio::Root::Exception ------------- MSG: This alignment has only 407 residues. Slice start [8265] is too big. STACK: Error::throw STACK: Bio::Root::Root::throw /home/jhannah/src/bioperl-live/Bio/Root/Root.pm:368 STACK: Bio::SimpleAlign::slice /home/jhannah/src/bioperl-live/Bio/SimpleAlign.pm:1080 STACK: j.pl:26 ----------------------------------------------------------- This is perl, v5.10.0 built for i686-linux ------------- EXCEPTION ------------- MSG: This alignment has only 407 residues. Slice start [34841] is too big. STACK Bio::SimpleAlign::slice /home/jhannah/src/bioperl-live/Bio/SimpleAlign.pm:1080 STACK toplevel j.pl:26 ------------------------------------- This is perl, v5.10.0 built for darwin-2level ------------- EXCEPTION ------------- MSG: Slice start has to be a positive integer, not [-19] STACK Bio::SimpleAlign::slice /Users/jhannah/src/bioperl-live/Bio/SimpleAlign.pm:1074 STACK toplevel j.pl:26 -------------------------------------
- I can reproduce that if I use $ARGV[0] or the '-file => shift' idiom. It's odd and looks to me like a Bio::Root::IO or AlignIO bug. In fact, I can get this to segfault (?!?) in some cases. I've fixed the script to show the version that works, along with the bug note, and will try to isolate a specific case that triggers the issue. --Chris Fields 17:16, 23 February 2009 (UTC)
- Hi guys. I'm not sure it's an IO issue directly. The code execution in regexes seems pretty touchy (I'll quote pod chapter & verse below). I get Jay's error on my machine (MSWin Vista/ActiveState) running the script as written, with
$fileset from$ARGV[0]. However, I make the following mod, wherein I eschew thecheck_match()subroutine and calculate the condition directly in the regex, as follows,
- Hi guys. I'm not sure it's an IO issue directly. The code execution in regexes seems pretty touchy (I'll quote pod chapter & verse below). I get Jay's error on my machine (MSWin Vista/ActiveState) running the script as written, with
$c =~ m{ (.{18,21}) (?{ # my $match = check_match($1); push @matches, [$1, pos(), length($1)] if ($1 && (($1 =~ tr/?/?/) <= 4)); }) (?!) }xig;
- and it works fine -- on
testaln.fasta, no output (there are no matches meeting the condition); oncjfields.fasta, big long slice dump.
- and it works fine -- on
- The weird error of Jay's seems to result from
pos()being set WAY beyond the end of$c. In Jay's case, apparentlypos()is 3713 (or prob 3712). This error shouldn't happen, since the test case should have no matches that meet the condition. Looks like this engine's jumped the track.
- The weird error of Jay's seems to result from
- Here are possibly relevant sections of perlre:
Due to an unfortunate implementation issue, the Perl code contained in these blocks is treated as a compile time closure that can have seemingly bizarre consequences when used with lexically scoped variables inside of subroutines or loops. There are various workarounds for this, including simply using global variables instead. If you are using this construct and strange results occur then check for the use of lexically scoped variables.
- I fooled around with scoping quite a bit (made $match, @matches global, other futzes) but continued to get
SEGVor other bizarre errors. (All the runs were in the debugger under Emacs, btw).
- I fooled around with scoping quite a bit (made $match, @matches global, other futzes) but continued to get
- The other section may hold some clue--it doesn't mention calling outside of the regex explicitly, but is it a hint that all is not kosher?
Because Perl's regex engine is currently not re-entrant, interpolated code may not invoke the regex engine either directly withm//ors///), or indirectly with functions such assplit.
- Well, that was fun. --Majensen 05:30, 26 February 2009 (UTC)
- Wow. Quite an expedition! Thanks for all the research! I don't have a pressing need to make this work right now, we were just exploring "fuzzy match" options in Perl since my exact match tendencies may be too strict sometimes. I haven't researched Perl alternatives to this method yet either. --Jhannah 13:31, 26 February 2009 (UTC)
- Debugging is kind of like eating potato chips: "Maybe I'll try just one more thing..." The "why the hell doesn't the damn thing work" drive is very strong in me. Just hope it'll ring bells in a guru's head (Chris?) --Majensen 13:38, 26 February 2009 (UTC)
- BTW, does the hack above make it work for you, Jay? --Majensen 13:41, 26 February 2009 (UTC)
- I haven't tried yet. My mentor is driving this interest, were as I tend to avoid coding on top of anything that ever does anything squirrely. -grin- He's out of town this week. I'll see what he thinks when he gets back. Thanks again! --Jhannah 13:56, 26 February 2009 (UTC)
- Chicken! (No problem at all... :) --Majensen 14:10, 26 February 2009 (UTC)
- The change above doesn't work, at least with perl 5.8.8 or 5.10 due to the the re-rentrant issue you mention above. tr/// works a bit differently but can't be called within either; you need a method call so the perl interpretor sees tr/// and precompiles it (as t/// requires). A possible workaround is to run an index() loop within the code block (haven't tested that yet). --Chris Fields 14:21, 26 February 2009 (UTC)
- Well, I thought there might be those issues (thanks for the explan); oddly it did work for me. Just grinding it out worked:
- Well, that was fun. --Majensen 05:30, 26 February 2009 (UTC)
$c =~ m{ (.{18,21}) (?{ # my $match = check_match($1); my $ct; for my $i (0..length($1)-1) { $ct++ if (substr($1,$i,1) eq '?'); } push @matches, [$1, pos(), length($1)] if ($ct <= 4); }) (?!) }xig;
- --Majensen 14:39, 26 February 2009 (UTC)
cjfields.fasta
>01/1-399 ATTAGCACCCAAAGCTAAGATTCTAATTTAAACTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACTATCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCATCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCTTTCTCGTCCCCATGGATGACCCCCC >02/1-399 ???????????????????????????????????????????TCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCCATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCATCCTTAACAGTACATGGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCC? >03/1-399 ??????????????????????????TTTAAACTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATCTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCATACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >04/1-399 ???????????????????????????????????????????????????????????? ????????????????????????????ACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCCCCTCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCATCCTTAACAGTACATGGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTCCTCGTCCCCATGGATGACCCCC? >05/1-399 ???????????????????????????????????TTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAGCAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >06/1-399 ??????????????????????????TTTAAACTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCCATGTATTTCGTACAT TACTGCCAGCCACCATGAATATCGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGTCA-CCCCTCACCCACTAG GATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCACGGATGACCCCC? >07/1-406 ????????????????????TTCTAATTTAAACTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCA??????????????????????????????ATGCTTACAAGCAAGTACAGC AATCGACCCTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >08/1-399 ??????????????????????????????????????TCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCTCCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGTCA-CCCCTTACCCATTAG GATATCAACAAACCTACCCGCCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCC? >09/1-399 ?????????????????????TCTAATTTAAACTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATCGTACGGTACCATAAATACTTCACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCC?? >10/1-399 ??????????????????????????????AACTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >11/1-399 ????????????????????????????????CTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATCGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >12/1-399 ??????????????????????????????????????????TTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCTCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAGGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >13/1-399 ????????????????????????????????????????TGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATCTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCATACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCACGGATGACCCCCC >14/1-399 ??????????????????????????????????????????TTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCTCCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTTACCCATTAG GATATCAACAAACCTACCCGCCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCC? >15/1-399 ???????????????????????????????????????????????????????????? ???????GTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTTACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCC? >16/1-399 ??????????????????????????TTTAAACTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >17/1-399 ????????????????????TTCTAATTTAAACTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATCTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCATACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGA?????? >18/1-399 ????????????????????????????????????????TGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTAACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCTCCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTTACCCATTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGAT???????? >19/1-399 ??????????????????????????????????????TCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACAGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGTCA-CCTCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCACGGATGACCCCC? >20/1-399 ???????????????????????????????????????????????????????????? ??????GGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACAGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCCCCTCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGTCA-CCTCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCACGGATGACCCCCC >21/1-399 ???????????????????????????????ACTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACAGTACCATAAATACTTGACTACCTGTAGTACAT AAAAACTCAAC--CCACATCAAAA-----CCCTGCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTGTCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATACCAACAAACCTACCCACCCTTAACAGTACATAGCACATAAAGTCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >22/1-399 ???????????????????????????????ACTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCCTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTTACCCACTAG GATACCAACAAACCTACCCACCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >23/1-399 ?????????????????????????ATTTAAACTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATCGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAGCCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC GATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTCACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >24/1-399 ???????????????????????????????????????????????????????????? ????????TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGCACAGC AATCAACCCTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGCCCCCATGGATGACCCCC? >25/1-399 ??????????????????????????????AACTATTCTCTGTTCTTTCATGGGGAAGCG GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCTCCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTTACCCATTAG GATATCAACAAACCTACCCGCCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >26/1-399 ??????????????????????????????AACTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCAACATGAATATTGCACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCTCCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTTACCCATTAG GATATCAACAAACCTACCCGCCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >27/1-399 ?????????????????????????????AAACTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTATCCATCCTTAACAGTACATGGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >28/1-404 ???????????????????????????????????TTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATCTCGTACAT TACTGCCAGCCACCATGAATATTGTACAGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAA???????????CCCCCATGCTTACAAGCAAGCACAGC GATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTGCCCATCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTTGTCCCCATGGATGAC????? >29/1-404 ????????????????????????????????CTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAA????????????????????????????????????? ???????????????????????????????????CCAAAGCCA-CCCCTTACCCATTAG GATATCAACAAACCTACCCGCCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >30/1-399 ??????????????????????????????AACTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAC--CCACATCAAAA-----CCCTCCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTTACCCATTAG GATATCAACAAACCTACCCRCCCTTAACAGTACATAGCACATAAAACCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCC? >31/1-404 ??????????????????????????????????????TCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCA???????????????CCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCATCCTTAACAGTACATGGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >32/1-399 ??????????????????????????????????????????TTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCAACATGAATATTGTACAGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAAC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTGCAGTCAAATCCTTTCTCGCCCCCATGGATGACCCCCC >33/1-399 ?????????????????????????????????????????????TTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATCGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCTCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGCCCCCAT???????????? >34/1-399 ?????????????????????????????????????????????????????????GCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATCGTACGGTACCATAAATACTTGACTACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCGCCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGCCCCCATGGATGACCCCCC >35/1-399 ???????????????????????????????????????????????????????????? ??????GGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCAACATGAATATTGCACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCTCCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTTACCCATTAG AATATCAACAAACCTACCCGCCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCC? >36/1-399 ???????????????????????????????????????????????????????????? ??????GGTACCACCCAAGTATTGACTCACCCATCAACAACCGCCATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AACCAACCTTCAACTATCACACATCAACTGCAACTCCAAGGCCA-CCCCTTACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >37/1-399 ??????????????????????????????????????TCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAATCCAAT--CCACATCAAAA-----CCCCCCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >38/1-399 ?????????????????????????????????????????????TTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATCGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGCACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGCCCCCATGGATGACCCCCC >39/1-399 ???????????????????????????????????????????????????????????? ??????GGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCTCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGCCCCCATGGATGACCCCCC >40/1-399 ????????????????????????????????????TCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCAGCATGAATATTGCACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCTCCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTTACCCATTAG GATATCAACAAACCTACCCGCCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCC? >41/1-399 ???????????????????????????????????????????????????????????? ??????GGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATCTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAAC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCATCCTTAACAGTACATGGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >42/1-399 ???????????????????????????????????????????????????????????? ????????????????????????????????ATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCATACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >43/1-399 ???????????????????????????????????????????????????????????? ??????????CCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATCGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCTAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGCACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGCCCCC?????????????? >44/1-399 ???????????????????????????????????????????????????????????? ??????GGTGCCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCAACATGAATATTGTACAGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAAC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAGACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTTCAGTCAAATCCCTTCTCGCCCCCATGGATGACCCCCC >45/1-399 ???????????????????????????????????TTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCTCCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTTACCCATTAG GATATCAACAAACCTACCCGCCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCC??? >46/1-399 ?????????????????????????????????????CTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGCACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCC? >47/1-399 ???????????????????????????????????????????????????????????? ??????GGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCAGCATGAATATTGCACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCTCCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTTACCCATTAG AATATCAACAAACCTACCCGCCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCC?????????????? >48/1-399 ????????????????????????????????????????TGTTCTTTCATGGGGAAGCA GATTTGGGTGCCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTTACCCACTAG GATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCC? >49/1-406 ???????????????????????????????????????????????????????????? ???????????????????????????????????????????????????????????? ???????????????????????????????????????????????????????????? ???????????????????????????????????????ATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATTAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCTACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCTTTCTCGTCCCCATGGATGACCCCCC >50/1-399 ????????????????????TTCTAATTTAAACTATTCTCTGTTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAAC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGCCCCCATGG?????????? >51/1-399 ???????????????????????????????????????????????????????????? ??????GGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAAC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCATCCTTAACAGTACATGGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC >52/1-399 ???????????????????????????????????????????????????????AAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTAACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCTCCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTTACCCATTAG GATATCAACAAACCTACCCGCCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCC?? >53/1-399 ??????????????????????????????????????????TTCTTTCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG AATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCC? >54/1-399 ???????????????????????????????????????????????????????????? ??????GGTGCCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTTACCCACTAG GATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCC? >55/1-399 ???????????????????????????????????????????????????????????? ???????????????????????????????????AACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGCCCCCATGGATGACCCCCC >56/1-399 ???????????????????????????????????????????????????????????? ??????GGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCTCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGCCCCCATGGATGACCCCCC >57/1-399 ???????????????????????????????????????????????????GGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATCGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG ?ATATCAACAAACCTACCCACCCTTAACAGYACATAGYACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGYCCCCATGGATGACCCCCC >58/1-399 ???????????????????????????????????????????????TCATGGGGAAGCA GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGTCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCC? >59/1-399 ???????????????????????????????????????????????????????????? ??????GGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCCCCTCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTCACCCACTAG GATATCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGAT???????? >60/1-399 ???????????????????????????????????????????????????????????A GATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACAT TACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT AAAAACCCAAT--CCACATCAAAA-----CCTTCCCCCCATGCTTACAAGCAAGTACAGC AATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCA-CCCCTTACCCATTAG GATATCAACAAACCTACCCGCCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACA TAGCACATTACAGTCAAATCCCTTCTCGCCCCCATGGATGACCCCC?
