Talk:HOWTOs

Wanted

Suggestions for new HOWTOs to be written. --jason stajich 02:22, 11 October 2006 (EDT)

• HOWTO:Alignments - dealing with MSAs and describing differences between pairwise alignment data obtained through Bio::SearchIO and that accessed through Bio::AlignIO system.
• HOWTO:Taxonomy - Tutorial of taxonomy objects. How to do things like classify BLAST/FASTA/HMMER hits, describe things like what major kingdoms are represented in the significant hits.
• HOWTO:GFF - working with GFF databases like Bio::DB::SeqFeature and Bio::DB::GFF. How to structure your data, access it, etc. Examples from the MODs like download GFF3 from FlyBase and start processing it to obtain information like splice-site patterns or something else not directly available.