Talk:Getting Fasta sequences from a GFF

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Output

To get nicely wrapped sequences, try adding something like the following:

Bio::SeqIO->new( -format => 'fasta', -fh => \*STDOUT )->write_seq( $seq );

Big GFF?

If your GFF won't fit into memory, why not index the fasta file instead? See:

Bio::Index::Fasta

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