Sweep
From BioPerl
The Sweep program has now a new version with a decoupled command-line and GUI interface, so the command-line version can be wrapped up into BioPerl Run.
The input files are basically:
- the "emphase" output file (see sweep doc (page6 Genotype data) Bio::PopGen::IO::emphase(?))
- a SNP file with the genomic coordinates with a header line like "snpid\tchr\tHG17" (for NCBI35)
