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- Category:Ab initio gene prediction
- Category:Administration
- Category:BioPerl Packages
- Category:Code
- Category:Community
- Category:Core Modules
- Category:DB Modules
- Category:Database
- Category:Developer resources
- Category:Disambiguation
- Category:Documentation
- Category:Events
- Category:EvolPopGen
- Category:Ext Modules
- Category:Formats
- Category:Gene prediction
- Category:Glossary
- Category:HOWTOs
- Category:Homology based gene prediction
- Category:Hot Topics
- Category:IRC
- Category:Installation
- Category:List Summaries
- Category:Microarray Modules
- Category:Modules
- Category:Molecular evolution
- Category:Network Modules
- Category:Networks
- Category:Orphan module
- Category:Other Projects
- Category:Pedigree Modules
- Category:People
- Category:Phylogenetic reconstruction
- Category:Pipeline Module
- Category:Run Modules
- Category:Scrapbook Analysis and Phylogenetics
- Category:Scrapbook Databasing
- Category:Scrapbook Graphics
- Category:Scrapbook Hugeness Issues
- Category:Scrapbook IO
- Category:Scrapbook Sequence Manipulations
- Category:Scrapbook Strings and RegExps
- Category:Scrapbook Utilities and Doodads
- Category:Support
- Category:TODO
- Category:Tools
- Category:Tree reconciliation
- Category:User resources