Sim4

From BioPerl

cDNA to genome alignment tool developed in Webb Miller's lab. It is available here or directly here.

References

1. Florea L, Hartzell G, Zhang Z, Rubin GM, and Miller W. A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res 1998 Sep; 8(9) 967-74. pmid:9750195. PubMed HubMed [sim4]