Sequence formats

From BioPerl

There are many different file formats for sequence data in Bioinformatics. The Bio::SeqIO module in BioPerl can parse all the following formats:

• ABI
• ACE
• AGAVE
• ALF
• ASCIITree
• BSML
• BSML_SAX
• CHADOXML
• CHAOS
• CHAOSXML
• CTF
• EMBL
• EntrezGene
• Excel
• EXP
• FASTA
• FASTQ
• FLYBASE_CHADOXML
• GAME
• GCG
• GenBank
• InterPro
• KEGG
• Lasergene
• LocusLink
• MetaFASTA
• PHD
• PIR
• PLN
• Qual
• Raw
• SCF
• Swissprot
• Tab
• Table
• TIGR
• TIGRXML
• Tinyseq
• ZTR