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Interwiki link to BLAST at wikiomics: wikiomics:BLAST

Template examples

Created Template:PM to simplify Module linking.

By typing {{PM|Bio::SeqIO}} you automatically get a link that looks like this:

Bio::SeqIO

It's a one parameter macro to save duplicate typing of the module name.

--Tseemann 19:19, 27 December 2005 (EST)

Testing new CPAN macro: Digest::MD5

Underscore issues...

Problem with underscores?

Or is it the Doclink macro?

Pdoc documentation: Bio::Graph::IO::psi_xml	CPAN documentation: Bio::Graph::IO::psi_xml

Here's my version:

BEFORE

_1_ = Bio::Graph::IO::psi xml mod = Bio::Graph::IO::psi_xml dir = bioperl-live url = Bio/Graph/IO/psi_xml.html

Pdoc documentation:
Bio::Graph::IO::psi_xml
Bio::Graph::IO::psi_xml
CPAN documentation: Bio::Graph::IO::psi_xml

AFTER

_1_ = Bio::Graph::IO::psi xml mod = Bio::Graph::IO::psi_xml dir = bioperl-live url = Bio/Graph/IO/psi_xml.html

The problem still occurs on this page Bio::Graph::IO::psi_xml - I guess the underscore means space in Wiki article names, but not in a macro paramter?

--Tseemann 18:56, 31 December 2005 (EST)

So this looks to be resolved now. In the future {{PAGENAMEE}} apparently gives you back the pagename with underscores. See PAGENAME and PAGENAMEE and Spaces vs underscores

--jason stajich 12:38, 3 January 2006 (EST)

HOWTO

Testing new HOWTO macro: SearchIO HOWTO (should link to HOWTO:SearchIO ...)

--Tseemann 16:06, 29 December 2005 (EST)

Bio::Tools::Run::PiseApplication

RSS Feed testing

Short on:

O|B|F News

full is not working

O|B|F News

Release 1.6 of BioPerl-run, BioPerl-db, BioPerl-network: All, I am proud to announce that the 1.6 release for BioPerl-run, BioPerl- db, and BioPerl-network are now available by direct download and via CPAN. These are designated as 1.006000, with a requirement for BioPerl 1.6 and higher (1.006000). FIXED: 1) Bio::Tools::Run::Primer3 now accepts primer3 or primer3_core as executable names 2) Bio::Tools::Run::Vista tests now pass if Vista.jar is installed. 3) bug fix in [...]
BioPerl 1.6 released: Release Pumpkin Chris Fields has announced the release of BioPerl 1.6 – the first stable release in a several years containing many significant improvements and bug fixes. I am proud to announce, on behalf of the BioPerl core developers, that BioPerl 1.6.0 is now available.
BioPerl 1.6 RC4: RC4 is up, we are days away from final release…
BioPerl branched for 1.6, RC1 is up: BioPerl has branched for 1.6 and the RC1 is up for testing as Chris announced.
BioPerl 1.6 preparations: BioPerl is preparing for version 1.6 release in the coming months. As part of this some restructuring and simplification of the packaging is occurring.
Bioperl 1.5.2 Release
new Bioperl website: I am pleased to announce the release of a new website for BioPerl. The site is based on the mediawiki software that was developed for the wikipedia project. We intend the site to be a place for community input on documentation and design for the BioPerl project. There is also a fair amount of documentation started surrounding bioinformatics tools and techniques applicable to using BioPerl and some of the authors who created these resources.
Bioperl 1.5.1: I am pleased to announce the 1.5.1 developer release of Bioperl.
Bioperl 1.5.1 RC4
PopGen HOWTO