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From BioPerl
Interwiki link to BLAST at wikiomics: wikiomics:BLAST
Contents |
Template examples
Created Template:PM to simplify Module linking.
By typing {{PM|Bio::SeqIO}} you automatically get a link that looks like this:
It's a one parameter macro to save duplicate typing of the module name.
--Tseemann 19:19, 27 December 2005 (EST)
Testing new CPAN macro: Digest::MD5
Underscore issues...
Problem with underscores?
Or is it the Doclink macro?
| Pdoc documentation: Bio::Graph::IO::psi_xml | CPAN documentation: Bio::Graph::IO::psi_xml |
|---|
Here's my version:
BEFORE
- _1_ = Bio::Graph::IO::psi xml
- mod = Bio::Graph::IO::psi_xml
- dir = bioperl-live
- url = Bio/Graph/IO/psi_xml.html
- Pdoc documentation:
- Bio::Graph::IO::psi_xml
- Bio::Graph::IO::psi_xml
- CPAN documentation: Bio::Graph::IO::psi_xml
AFTER
- _1_ = Bio::Graph::IO::psi xml
- mod = Bio::Graph::IO::psi_xml
- dir = bioperl-live
- url = Bio/Graph/IO/psi_xml.html
The problem still occurs on this page Bio::Graph::IO::psi_xml - I guess the underscore means space in Wiki article names, but not in a macro paramter?
--Tseemann 18:56, 31 December 2005 (EST)
So this looks to be resolved now. In the future {{PAGENAMEE}} apparently gives you back the pagename with underscores. See PAGENAME and PAGENAMEE and Spaces vs underscores
--jason stajich 12:38, 3 January 2006 (EST)
HOWTO
Testing new HOWTO macro: SearchIO HOWTO (should link to HOWTO:SearchIO ...)
--Tseemann 16:06, 29 December 2005 (EST)
Bio::Tools::Run::PiseApplication
RSS Feed testing
Short on:
full is not working
O|B|F News
|
--jason stajich 19:59, 23 April 2006 (EDT)
Dumb test
References
I like the wikipedia linking to articles within an article, but the Biblio plugin is so much cooler for not having to type in a whole reference .
- Insights into social insects from the genome of the honeybee Apis mellifera. Nature 2006 Oct 26; 443(7114) 931-49. pmid:17073008.
Transcribing/editing template tests
Your emanuensis trying out some typing-savers...
[[User:{{{2}}}|Fred]] Banjovi
- Template:Cruft:Boog : getting parameters...
Parm1 is Wittgenstein. On the other hand, Parm2 is, in fact, Sartre. Funny how these things work out.
How's your mom, --[[User:Majensen|]] ?
Marxism: "Time flies like an arrow, but fruitflies like a banana." --Groucho
- Template:Discuss:Thread : fooling about...
(thread)
( thread)
(for a good time, click thread)
- Template:Discuss:Thread
- Template:Discuss:Ed
- Template:Discuss:Quips
- Template:Discuss:Opines
- Template:Discuss:HoldsForth
- Template:Discuss:EdQuips
- Template:Discuss:EdOpines
- Template:Discuss:Date
TreeAndMenu
Let's test the TreeAndMenu
Widgets
Create a Winter add-in that works like the gravatar add-in:
No biscuit:
# ERROR: Account maj?ruin=true not valid (arg 1)
No biscuit either:
# ERROR: Valid widget types are 'Detailed', 'Rank', and 'Tiny' (arg 2)
NO
Yes
Yes
Yes
NO
can we render the external stuff as-is?? sometimes... set
$wgAllowExternalImagesFrom = array( 'http://www.ohloh.net/' );
then this should work
https://www.ohloh.net/accounts/40601?ref=Tiny
but it doesn't, because this does point directly to a file with an img extension, probably.
or maybe
No. Hmm.
Firebug to the rescue!! Try....
https://www.ohloh.net/accounts/maj/widgets/account_detailed.gif
YES! Now to create the php widget, so that Ohloh is duly linked back to.
- try the custom ohloh gadget
http://www.ohloh.net/accounts/maj/widgets/account_tiny.gif http://www.ohloh.net/accounts/maj/widgets/account_tiny.gif
Ok, a wiki render timing issue. The placement of the widget-generated text comes after point at which figure urls are parsed and rendered. What happens if we template it?
{{Cruft:Ohloh|maj|Tiny}}
Forget about the WikiWidget; just template it:
{{Cruft:OhlohWidget|maj|Tiny}}
OOOOH! That works!
bad widget, no biscuit:
Sorry, account/widget spec is invalid : got /../narb and Tiny
bad widget, down boy!:
Sorry, account/widget spec is invalid : got 40601 and EraseAll
try:
... Yes we can -- but how safe??? try the ohloh gadget:
works but Google cruft everywhere.
Gravatars
should see one here:
Sweet. Now...what about the new Winter function?...
http://www.gravatar.com/avatar/a95faf027ae8ac4d34e3e94847b374fa.jpg
Again, a timing problem.
http://www.gravatar.com/avatar/a95faf027ae8ac4d34e3e94847b374fa.jpg
# ERROR: Email maj at fortinbras dot us not valid
http://www.gravatar.com/avatar/a95faf027ae8ac4d34e3e94847b374fa.jpg
Templating just won't get the url to the page on time. Have to resort to Winter itself.


