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Interwiki link to BLAST at wikiomics: wikiomics:BLAST

Contents 1 Template examples 1.1 Underscore issues... 1.2 HOWTO 2 RSS Feed testing 3 References

Template examples

Created Template:PM to simplify Module linking.

By typing {{PM|Bio::SeqIO}} you automatically get a link that looks like this:

Bio::SeqIO

It's a one parameter macro to save duplicate typing of the module name.

--Tseemann 19:19, 27 December 2005 (EST)

Testing new CPAN macro: Digest::MD5

Underscore issues...

Problem with underscores?

• CGI_Lite
• Bio::Graph::IO::psi_xml
• Bio::Graph::IO::psi%5Fxml

Or is it the Doclink macro?

---

Pdoc documentation: Bio::Graph::IO::psi_xml	CPAN documentation: Bio::Graph::IO::psi_xml

---

Here's my version:

BEFORE

• _1_ = Bio::Graph::IO::psi xml
• mod = Bio::Graph::IO::psi_xml
• dir = bioperl-live
• url = Bio/Graph/IO/psi_xml.html

---

• Pdoc documentation:
• Bio::Graph::IO::psi_xml
• Bio::Graph::IO::psi_xml
• CPAN documentation: Bio::Graph::IO::psi_xml

---

AFTER

• _1_ = Bio::Graph::IO::psi xml
• mod = Bio::Graph::IO::psi_xml
• dir = bioperl-live
• url = Bio/Graph/IO/psi_xml.html

---

The problem still occurs on this page Bio::Graph::IO::psi_xml - I guess the underscore means space in Wiki article names, but not in a macro paramter?

--Tseemann 18:56, 31 December 2005 (EST)

So this looks to be resolved now. In the future {{PAGENAMEE}} apparently gives you back the pagename with underscores. See PAGENAME and PAGENAMEE and Spaces vs underscores

--jason stajich 12:38, 3 January 2006 (EST)

HOWTO

Testing new HOWTO macro: SearchIO HOWTO (should link to HOWTO:SearchIO ...)

--Tseemann 16:06, 29 December 2005 (EST)

Bio::Tools::Run::PiseApplication

RSS Feed testing

Short on:

O|B|F News Bioperl 1.5.2 Release new Bioperl website Bioperl 1.5.1 Bioperl 1.5.1 RC4 PopGen HOWTO Beginners HOWTO Bioperl 1.5.0 released Bioperl 1.5 RC 2 Bioperl 2005 Summary Bioperl preparing 1.5 release

full is not working

O|B|F News Bioperl 1.5.2 Release new Bioperl website I am pleased to announce the release of a new website for BioPerl. The site is based on the mediawiki software that was developed for the wikipedia project. We intend the site to be a place for community input on documentation and design for the BioPerl project. There is also a fair amount of documentation started surrounding bioinformatics tools and techniques applicable to using BioPerl and some of the authors who created these resources. Bioperl 1.5.1 I am pleased to announce the 1.5.1 developer release of Bioperl. Bioperl 1.5.1 RC4 PopGen HOWTO Beginners HOWTO Bioperl 1.5.0 released Bioperl 1.5 RC 2 Bioperl 2005 Summary Bioperl preparing 1.5 release

--jason stajich 19:59, 23 April 2006 (EDT)

References

I like the wikipedia linking to articles within an article, but the Biblio plugin is so much cooler for not having to type in a whole reference .

1. Insights into social insects from the genome of the honeybee Apis mellifera. Nature 2006 Oct 26; 443(7114) 931-49. pmid:17073008. PubMed HubMed [honeybee2006]