Prodom multiple alignment format
From BioPerl
Description
See http://protein.toulouse.inra.fr/prodom/2004.1/documentation/data.php
Example
ID 20167 p2002.1 10 seq. AC PD266930 KW FADR(2) Y586(1) // COMPLETE PROTEOME DNA-BINDING FATTY TRANSCRIPTION REGULATION METABOLISM REGULATOR ACID ACTIVATOR LA 74 ND 10 CC -!- DIAMETER: 119 PAM CC -!- RADIUS OF GYRATION: 53 PAM CC -!- SEQUENCE CLOSEST TO CONSENSUS: Q8ZEL9_YERPE 5-78 (distance:15 PAM) DC This family was generated by psi-blast, with a profile built from the seed aligment of the following SCOP FAMILY DC a.4.5.6 AL P09371|FADR_ECOLI 4 77 0.22 AQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNNFWETS AL Q8ZP15|Q8ZP15_SALTY 5 78 0.22 AQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNNFWETS AL Q8ZEL9|Q8ZEL9_YERPE 5 78 0.22 AQSPAGFAEEYIIESIWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNNFWETS AL Q8Z685|Q8Z685_SALTI 5 78 0.35 AQSPAGFAEEYIIESIWNNCFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNNFWETS AL Q9KQU8|Q9KQU8_VIBCH 5 78 0.62 AKSPAGFAEKYIIESIWNGRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNQFMETS AL Q9CPJ0|Q9CPJ0_PASMU 10 83 0.77 AQSPAGLAEEYIVRSIWNNHFPPGSDLPAERELAEKIGVTRTTLREVLQRLARDGWLNIQHGKPTKVNNIWETS AL P44705|FADR_HAEIN 10 81 1.08 AQSPAALAEEYIVKSIWQDVFPAGSNLPSERDLADKIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNNIWD.. AL O07792|Y586_MYCTU 17 77 2.08 .........EQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAGLVEVRQGDVTTVRDF.... AL Q11159|Y494_MYCTU 27 77 2.21 ...........IADAILDGVFPPGSTLPPERDLAERLGVNRTSLRQGLARLQQMGLIEVRHG............ AL Q8XFI2|Q8XFI2_SALTY 59 109 2.23 ...........IIKLINDNIFPPGTFLPPERELAKQLGVSRASLREALIVLEISGWIVIQSG............ CO AQSPAGFAEEYIVKSIWDGVFPPGSTLPPERELAERLGVSRTSLREALQRLERDGWIEIQHGKPTKVNNFWETS DR INTERPRO; IPR000524 "Bacterial regulatory proteins, GntR" DR PfamA; PF00392 gntR DR PROSITE; PS00043 PDOC00042 HTH_GNTR_FAMILY (27-51) DR PDB; 1H9T chain B (5-78) Q8ZP15_SALTY (5-78),1HW1 chain A (5-78),1HW1 chain B (5-78) DR PDB; 1H9T chain A (5-78) Q8ZP15_SALTY (5-78) ... //
