OrthoMCL

From BioPerl

This tool uses MCL to construct sets of orthologous genes based on sequence similarity search results for all-vs-all genome searches typically using protein sequences. The OrthoMCL site has more information.

References

1. Li L, Stoeckert CJ Jr, and Roos DS. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 2003 Sep; 13(9) 2178-89. doi:10.1101/gr.1224503 pmid:12952885. PubMed HubMed [orthomcl]
2. Chen F, Mackey AJ, Stoeckert CJ Jr, and Roos DS. OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Res 2006 Jan 1; 34(Database issue) D363-8. doi:10.1093/nar/gkj123 pmid:16381887. PubMed HubMed [orthomcldb]

All Medline abstracts: PubMed HubMed