News

O|B|F News

BioPerl-DB, BioPerl-Run, BioPerl-Network 1.6.9 released

The latest BioPerl-DB, BioPerl-Run, and BioPerl-Network code has been released to CPAN: BioPerl-Run BioPerl-DB BioPerl-Network Please report any bugs to our Redmine server. Enjoy! chris

BioPerl 1.6.9 released

BioPerl 1.6.9 is now available in CPAN.

OBF and Google Summer of Code 2011

Google announced today the Open Bioinformatics Foundation (OBF) has been accepted as a mentoring organization for the 2011 Google Summer of Code! Continue reading →

Introduction of OpenID logins for OBF wikis

Due to a huge influx of spam across all OBF wikis, we are in the process of locking down new user account creation and adding OpenID logins for the OBF wikis (BioPerl example). User account creation via the old login … Continue reading →

OBF Redmine server now available

The OBF now has a sparkly new Redmine instance running on Amazon EC2,

BioPerl has moved to GitHub

BioPerl has migrated to git and

O|B|F Google Summer of Code Accepted Students

I’m pleased to announce the acceptance of OBF’s 2010 Google Summer of Code students, listed in alphabetical order with their project titles and primary mentors: Mark Chapman (PM Andreas Prlic) – Improvements to BioJava including Implementation of Multiple Sequence Alignment … Continue reading →

O|B|F in Google Summer of Code

O|B|F is in Google Summer of Code, student applications due to Google April 9, 2010. Continue reading →

BioPerl at GMOD Meeting 2010

BioPerl developers and users attended the BioPerl satellite meeting on January 13th, just

Sanger FASTQ format and the Solexa/Illumina variants

I’m delighted to announce an open access publication in Nucleic Acids Research describing the FASTQ file format based on the conventions agreed by the OBF projects: The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ … Continue reading →

gmane.comp.lang.perl.bio.general

• Re: Bioperl parsing output file
• Bioperl parsing output file
• Check out my photos on Facebook
• Only 10 days left to register for DAS Workshop 2012
• Re: Running into problems
• Check out my photos on Facebook
• Re: Lineage from GB files
• Re: Running into problems
• Re: `get_feature_by_name` not working after migrating to Bio::DB::SeqFeature::Store from a Bio::DB::GFF backend
• Re: `get_feature_by_name` not working after migrating to Bio::DB::SeqFeature::Store from a Bio::DB::GFF backend
• Re: `get_feature_by_name` not working after migrating to Bio::DB::SeqFeature::Store from a Bio::DB::GFF backend
• Re: `get_feature_by_name` not working after migrating to Bio::DB::SeqFeature::Store from a Bio::DB::GFF backend
• Re: `get_feature_by_name` not working after migrating to Bio::DB::SeqFeature::Store from a Bio::DB::GFF backend
• Re: Running into problems
• Re: `get_feature_by_name` not working after migrating to Bio::DB::SeqFeature::Store from a Bio::DB::GFF backend
• Re: Running into problems
• Re: `get_feature_by_name` not working after migrating to Bio::DB::SeqFeature::Store from a Bio::DB::GFF backend
• Re: `get_feature_by_name` not working after migrating to Bio::DB::SeqFeature::Store from a Bio::DB::GFF backend
• Re: Running into problems
• Re: `get_feature_by_name` not working after migrating to Bio::DB::SeqFeature::Store from a Bio::DB::GFF backend
• `get_feature_by_name` not working after migrating to Bio::DB::SeqFeature::Store from a Bio::DB::GFF backend