Network 0 1.5.2 delta
From BioPerl
These are detailed notes on changes made between the first version and bioperl-network-release-1-5-2.
- Bio::Network::Edge
- Add all files
- Bio::Network::IO
- Add all files
- Rename
- Bio::Network::IO::dip_tab
- Add all files
- Bio::Network::IO::psi
- Rename
- Fix for Bio::Species changes
- Note on PSI file names
- Allow a node to use a DIP id as an accession
- Remove debugging
- Add more database name synonyms - this is not good
- Use common name as species name if field fullName is missing
- Bio::Root::Root, not Bio::Root::Object
- Bio::Network::IO::psi::intact
- Email changed
- Bio::Network::IO::psi_xml
- Add all files
- Rename
- Bio::Network::Interaction
- Add all files
- Bio::Network::Node
- Add all files
- Bio::Network::ProteinNet
- Add all files
- Add interactions()
- Rename
- Add required version number
- Version .80 of Graph, or greater
- Add to Requirements
- Build.PL
- New Build.PL install system, Makefile.PL still works but warns
- Makefile.PL
- Add all files
- Rename
- Add version number, correct text
- WriteMakefile now uses info from %packages in PREREQ_PM and displays warnings during "perl Makefile.PL" if min version numbers of prereqs are not met
- Check Bioperl is installed before proceeding with makefile
- Better test for existing Bioperl installation
- Now uses info from %packages to populate PREREQ_PM in WriteMakefile
- New-style with clearer version checking
- Good style for ¬$VERSION
- Do not die, just warn when required things are missing
- Some modules don't define VERSION, default to 0
- New Build.PL install system, Makefile.PL still works but warns
- ModuleBuildBioperl.pm
- New Build.PL install system, Makefile.PL still works but warns
- Update fix from core
