Neighbor-Joining
From BioPerl
Tree reconstruction method [1] using a distance matrix like that produced by ProtDist.
References
- Saitou N and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987 Jul; 4(4) 406-25. pmid:3447015.
- Tateno Y, Takezaki N, and Nei M. Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site. Mol Biol Evol 1994 Mar; 11(2) 261-77. pmid:8170367.
- Pearson WR, Robins G, and Zhang T. Generalized neighbor-joining: more reliable phylogenetic tree reconstruction. Mol Biol Evol 1999 Jun; 16(6) 806-16. pmid:10368958.
- Tamura K, Nei M, and Kumar S. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci U S A 2004 Jul 27; 101(30) 11030-5. doi:10.1073/pnas.0404206101 pmid:15258291.
- Gascuel O and Steel M. Neighbor-joining revealed. Mol Biol Evol 2006 Nov; 23(11) 1997-2000. doi:10.1093/molbev/msl072 pmid:16877499.
