Module:Bio::Tools::Run::Blast::RemoteNCBI

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Pdoc documentation: Bio::Tools::Run::Blast::RemoteNCBI	CPAN documentation: Bio::Tools::Run::Blast::RemoteNCBI

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Purpose

Submit and retrieve BLAST jobs from an NCBI style CGI script (WebBlast)

Status

This module is in development. Documentation is not yet available.

Comments

The new module will be a "pure perl" implementation, but will be limited to XML formatted results only.

The modules in the Bio::Tools::Run::Blast family may include:

 --> StandAlone     (support for both WU-BLAST and NCBI-BLAST local binaries and 
                     eventually MPI-BLAST too)
 --> RemoteNCBI     (currently the RemoteBlast server)
 --> RemoteEBISOAP  (EBI has a nice SOAP interface that works quite well, but 
                     may not provide all the same databases as what people expect 
                     from NCBI)
 --> RemoteNetBlast (blastcl3 or netblast local executable)

Authors

This module is being developed by Roger Hall based on Module:Bio::Tools::Run::RemoteBlast by Jason Stajich.

The module should be available by 080101.

Bugs

Please report bugs to bugzilla.