Module:Bio::AlignIO::stockholm

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Bio::AlignIO::stockholm
PDoc Bio::AlignIO::stockholm
CPAN Bio::AlignIO::stockholm
metaCPAN Bio::AlignIO::stockholm

Introduction

This module provides a parser and a writer (write_aln) for the stockholm format.

Notes

Most data is parsed into various Bio::AnnotationI and Bio::Seq::Meta objects and added to the Bio::AnnotatableI Bio::SimpleAlign object. The write_aln() function of Bio::AlignIO::stockholm creates annotated output.

Since this module doesn't yet provide complete support for all of the features of the Stockholm format, you may also want to check out sreformat from the SQUID package.

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