Mummer is a tool for aligning whole genomes using a suffix-tree to quickly lookup identical words and build alignments.
There currently aren't any modules implemented to interact with this tool.
- Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, and Salzberg SL. Versatile and open software for comparing large genomes. Genome Biol. 2004;5(2):R12. DOI:10.1186/gb-2004-5-2-r12 |
- Delcher AL, Phillippy A, Carlton J, and Salzberg SL. Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res. 2002 Jun 1;30(11):2478-83.