MAUVE

MAUVE [1, 2, 3] is a program by Aaron Darling used for constructing multiple genome alignments.

References

1. Darling AC, Mau B, Blattner FR, and Perna NT. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res. 2004 Jul;14(7):1394-403. DOI:10.1101/gr.2289704 |
2. Darling AE, Treangen TJ, Messeguer X, and Perna NT. Analyzing patterns of microbial evolution using the mauve genome alignment system. Methods Mol Biol. 2007;396:135-52. DOI:10.1007/978-1-59745-515-2_10 |
3. Darling AE, Mau B, and Perna NT. progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One. 2010 Jun 25;5(6):e11147. DOI:10.1371/journal.pone.0011147 |