MAFFT
From BioPerl
Multiple Alignment through Fast Fourier Transform is available here.
References
- Katoh K, Kuma K, Toh H, and Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 2005; 33(2) 511-8. doi:10.1093/nar/gki198 pmid:15661851.
- Katoh K, Misawa K, Kuma K, and Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 2002 Jul 15; 30(14) 3059-66. pmid:12136088.
