HOWTO:Nexml/trees.nex
From BioPerl
#NEXUS
BEGIN TREES;
TRANSLATE
1 Struthio_camelus,
2 Rhea_americana,
3 Pterocnemia_pennata,
4 Casuarius_casuarius,
5 Dromaius_novaehollandiae,
6 Nothoprocta_cinerascens,
7 Eudromia_elegans,
8 Pygoscelis_adeliae_f,
9 Pygoscelis_adeliae_y,
10 Spheniscus_humboldti,
11 Phalacrocorax_sulcirostris,
12 Anhinga_novaehollandeae,
13 Nycticorax_nycticorax,
14 Chauna_chavaria,
15 Anseranas_semipalmata,
16 Dendrocygna_arcuata,
17 Dendrocygna_autumnalis,
18 Dendrocygna_eytoni_d,
19 Dendrocygna_eytoni_e,
20 Dendrocygna_viduata,
21 Coscoroba_coscoroba,
22 Cygnus_atratus,
23 Goose,
24 Anser_indicus,
25 Branta_canadensis,
26 Cereopsis_novaehollandiae,
27 Chloephaga_picta,
28 Duck,
29 Anas_platyrhynchos,
30 Megapodius_freycinet,
31 Leipoa_ocellata,
32 Ortalis_vetula,
33 Penelope_jacquacu,
34 Penelope_superciliaris,
35 Bonasa_umbellus,
36 Tympanuchus_cupido,
37 Oreortyx_pictus,
38 Callipepla_squamata_n,
39 Callipepla_squamata_s,
40 Lophortyx_californicus,
41 Colinus_virginianus,
42 Cyrtonyx_montezumae_l,
43 Cyrtonyx_montezumae_s,
44 Alectoris_chukar,
45 Alectoris_rufa,
46 Francolinus_afer,
47 Francolinus_erckelii,
48 Francolinus_coqui_v,
49 Francolinus_coqui_a,
50 Francolinus_francolinus_a,
51 Francolinus_francolinus_v,
52 Francolinus_pondicerianus,
53 Perdix_perdix,
54 Coturnix_delegorguei,
55 Coturnix_coturnix_japonica_1,
56 Coturnix_coturnix_japonica_2,
57 Arborophilia_torqueola,
58 Bambusicola_thoracica,
59 Tragopan_satyra,
60 Tragopan_temmincki,
61 Lophophorus_impejanus,
62 Crossoptilon_auritum,
63 Lophura_edwardsi,
64 Lophura_ignita,
65 Gallus_gallus,
66 Grey_jungle_fowl,
67 Phasianus_colchicus,
68 Syrmaticus_ellioti,
69 Syrmaticus_reevesii,
70 Chrysolophus_amherstiae,
71 Polyplectron_bicalcaratum,
72 Argusianus_argus_argus,
73 Pavo_cristatus,
74 Afropavo_congensis,
75 Numida_meleagris,
76 Acryllium_vulturinum,
77 Meleagris_gallopavo,
78 Grus_carunculatus,
79 Anthropoides_virgo,
80 Grus_vipio,
81 Fulica_atra,
82 Vanellus_spinosus,
83 Larus_rudibundus,
84 Turnix_sylvatica,
85 Gallirallus_australis,
86 Geococcyx_californianus,
87 Dacelo_novaeguineae,
88 Carpococcyx_renauldi,
89 Podargus_strigoides
;
TREE * PAUP_1 = [&R] (1,(((2,3),(4,5)),((((((((((6,7),((30,31),(((32,33),34),(((((((35,57),((((53,67),70),(62,(63,64),(68,69))),
(((54,(55,56)),84),74))),(((46,(48,49)),47),71)),((36,59),60),(61,(75,76))),(72,73),77),((44,45),((((50,51),58),52),(65,66)))),
(((37,((38,39),40)),41),(42,43)))))),14),15),((((16,20),(18,19)),17),((((21,26),(27,(28,29))),22),((23,24),25)))),(78,79,80)),87),
((81,85),(82,83))),(8,9,(10,((11,(86,88)),13),12))),89)));
END;