GeneMarkS

Description

GeneMarkS is a gene prediction algorithm which utilizes a non-supervised training procedure and can be used for a newly sequenced prokaryotic genome with no prior knowledge of any protein or rRNA genes GeneMarkS.

More information at the GeneMark server GeneMark.

Example output

GeneMark.hmm PROKARYOTIC (Version 2.1)
Sequence file name: sequence, RBS: Y
Model file name: GeneMarkS_plus_Heuristic_AT_and_NONC.mod
Model organism: Pseudonative.model
Wed Jan 12 19:08:39 2005

Predicted genes
   Gene    Strand    LeftEnd    RightEnd       Gene     Class
    #                                         Length
    1        +          <2         109          108        1
    2        -         160        1080          921        1
    3        +        1193        2527         1335        1
    4        -        2642        4390         1749        1
    5        -        4424        4519           96        1
    6        -        4554        5465          912        1
    7        +        5509        6264          756        1
    8        -        6394        8115         1722        1
    9        -        8116        8595          480        1
   10        +        8701        8829          129        1

References

<biblio>

1. GeneMarkS pmid=11410670
2. GeneMark pmid=15980510

</biblio>