BioPerl publications

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A sample of papers related to or using BioPerl.

Search Google Scholar for BioPerl references.

These lists are undoubtedly incomplete please add to it where appropriate

Contents

Papers which should be cited when using BioPerl

The first paper is the main BioPerl citation for using the toolkit, the second is for Gbrowse and the third is for the PopGen modules.

  1. Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, Fuellen G, Gilbert JG, Korf I, Lapp H, Lehväslaiho H, Matsalla C, Mungall CJ, Osborne BI, Pocock MR, Schattner P, Senger M, Stein LD, Stupka E, Wilkinson MD, and Birney E. The Bioperl toolkit: Perl modules for the life sciences. Genome Res. 2002 Oct;12(10):1611-8. DOI:10.1101/gr.361602 | PubMed ID:12368254 | HubMed [bioperl2002]
  2. Stein LD, Mungall C, Shu S, Caudy M, Mangone M, Day A, Nickerson E, Stajich JE, Harris TW, Arva A, and Lewis S. The generic genome browser: a building block for a model organism system database. Genome Res. 2002 Oct;12(10):1599-610. DOI:10.1101/gr.403602 | PubMed ID:12368253 | HubMed [gbrowse2002]
  3. Stajich JE and Hahn MW. Disentangling the effects of demography and selection in human history. Mol Biol Evol. 2005 Jan;22(1):63-73. DOI:10.1093/molbev/msh252 | PubMed ID:15356276 | HubMed [perlmorphism2005]
All Medline abstracts: PubMed | HubMed

References to BioPerl in PubMed

Pubdata.jpg

Projects or Papers which cite BioPerl

pre-2002

BioPerl publications/pre2002

2002

BioPerl publications/2002

2003

BioPerl publications/2003

2004

BioPerl publications/2004

2005

BioPerl publications/2005

2006

BioPerl publications/2006

2007

BioPerl publications/2007

2008

BioPerl publications/2008

Books that use or describe BioPerl

(Note: some of these only mention the toolkit in passing.)

BioPerl publications/Books

Patents that use or reference BioPerl

BioPerl publications/Patents

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