BLASTN output
From BioPerl
BLASTN 2.0.11 [Jan-20-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= U51677
(2575 letters)
Database: embl.fas
442,729 sequences; 675,252,082 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51677 Human non-histone chromatin protein HMG1 (HMG1) gene, co... 4129 0.0
L38477 Mus musculus (clone Clebp-1) high mobility group 1 prote... 353 7e-95
X80457 M.musculus HMG1 gene 353 7e-95
U00431 Mus musculus HMG-1 mRNA, complete cds. 353 7e-95
L08048 Human non-histone chromosomal protein (HMG-1) retropseud... 349 1e-93
X12597 Human mRNA for high mobility group-1 protein (HMG-1). 349 1e-93
M64986 Rat amphoterin mRNA, complete cds. 345 2e-92
Z11997 M.musculus mRNA for non-histone chromosomal high-mobilit... 345 2e-92
D63874 Human mRNA for HMG-1, complete cds. 345 2e-92
Z95115 Human DNA sequence from BAC 445C9 on chromosome 22q12.1. 337 4e-90
X12796 Bovine mRNA for high mobility group 1 (HMG1) protein 335 2e-89
M26110 Bovine high-mobility-group protein (HMG-1) mRNA, 3' end. 327 4e-87
AF009343 Mus musculus HMG-like protein (Trf) mRNA, complete cds. 305 2e-80
M21683;M21684 Pig nonhistone protein HMG1 mRNA, complete cds. 303 6e-80
L13805 Homo sapiens (clone 06) high mobility group 1 protein mRNA 260 8e-67
D14718 Human chromosomal protein HMG1 related gene. 252 2e-64
Y00365 Chinese hamster HMG-1 gene for high mobility group prote... 246 1e-62
M63852 Rat high mobility group 1 protein synthetic gene, comple... 226 1e-56
Y00463 Rat mRNA for high mobility group protein HMG1 226 1e-56
X80466 M.musculus HMG1-R-227 gene 210 7e-52
X80462 M.musculus HMG1-R-154 gene 184 4e-44
X80461 M.musculus HMG1-R-145 gene 147 8e-33
X80459 M.musculus HMG1-R-177 gene 133 1e-28
X80467 M.musculus HMG1-R-87 gene 133 1e-28
X80465 M.musculus HMG1-R-168 gene 133 1e-28
X80463 M.musculus HMG1-R-159 gene 131 5e-28
L32859 Rainbow trout HMG-1 gene exons 2-5, complete cds. 127 8e-27
X80460 M.musculus HMG1-R-135 gene 127 8e-27
X80464 M.musculus HMG1-R-161 gene 125 3e-26
X02666 Trout mRNA for high mobility group protein HMG-T 117 7e-24
U21933 Xenopus laevis high mobility group protein-1 (HMG-1) mRN... 107 7e-21
I14731 Sequence 10 from patent US 5451670. 92 4e-16
X63463 G.gallus HMG2a mRNA 90 2e-15
Z29356 Gallus domesticus of h71t7 gene encoding G.domesticus ex... 82 4e-13
D84418 Rat mRNA for chromosomal protein HMG2, complete cds. 78 6e-12
Z46757 M.musculus mRNA for high mobility group 2 protein. 78 6e-12
U31513 Ambystoma mexicanum high mobility group protein-2 (HMG-2... 76 3e-11
D14314 Chicken mRNA for HMG-1, complete cds. 70 2e-09
Z17240 Homo sapiens for mRNA encoding HMG2B. 70 2e-09
M83665 Human high mobility group 2 protein (HMG-2) gene, comple... 70 2e-09
X62534 H.sapiens HMG-2 mRNA 70 2e-09
X98857 L.fluviatilis mRNA for HMG protein 68 6e-09
X67668 M.musculus mRNA for high mobility group 2 protein 62 4e-07
J02895 Pig non-histone chromosomal protein (HMG2) mRNA, complet... 62 4e-07
D30765 Xenopus laevis mRNA for HMG-X protein, complete cds. 60 2e-06
L32954 Rainbow trout HMG-T2 gene exons 1-4, complete cds. 54 9e-05
M83235 Gallus gallus non-histone chromosomal protein (HMG2) mRN... 52 4e-04
AF003626 Homo sapiens cosmids IM0525, LC1233, Qc3C1, LB1439, Qc... 50 0.001
M80574 Gallus domesticus high-mobility group-2 protein (HMG-2) ... 46 0.023
X80869 P.citri gene for cytochrome oxidase subunit I 46 0.023
AF022465 Mus musculus high mobility group protein homolog HMG4 ... 44 0.090
AC002510 Arabidopsis thaliana chromosome II BAC T32G6 genomic s... 44 0.090
AB009838 Loligo bleekeri mitochondrial DNA, complete sequence. 44 0.090
Y10043 Homo sapiens mRNA for high mobility group protein HMG2a 44 0.090
AC004008 Human PAC clone DJ0899B21 from 7p15-p21, complete sequ... 42 0.36
AE001182;AE000783 Borrelia burgdorferi (section 68 of 70) of th... 40 1.4
AE000963;AE000782 Archaeoglobus fulgidus section 144 of 172 of ... 40 1.4
U60491 Nicotiana tabacum actin (Tob66) gene, partial cds. 40 1.4
AB001684 Chlorella vulgaris C-27 chloroplast DNA, complete sequ... 40 1.4
Z50742 Caenorhabditis elegans cosmid K09A11 40 1.4
X64643 H.sapiens c6.1A mRNA 40 1.4
Z83838 Human DNA sequence from PAC 127B20 on chromosome 22q11.2... 40 1.4
L77118 Methanococcus jannaschii large extra-chromosomal element... 38 5.5
L08814 Rat CIIDBP (homologous to human SSRP-1 and mouse T160 ge... 38 5.5
M18222;J03590 Mouse CD3-delta (T3-delta) gene, 5' end; and CD3-... 38 5.5
X95600 M.musculus mRNA for cadherin-8 38 5.5
AB010437 Rattus rattus rCdh8-a1 mRNA for cadherin-8, complete cds. 38 5.5
AB010436 Rattus rattus rCdh8 mRNA for cadherin-8, complete cds. 38 5.5
AL021633 Arabidopsis thaliana DNA chromosome 4, BAC clone F8F16... 38 5.5
I55098 Sequence 53 from patent US 5646250. 38 5.5
I55093 Sequence 43 from patent US 5646250. 38 5.5
I55092 Sequence 41 from patent US 5646250. 38 5.5
I46829 Sequence 47 from patent US 5639634. 38 5.5
I34431 Sequence 53 from patent US 5597725. 38 5.5
I34426 Sequence 43 from patent US 5597725. 38 5.5
I34425 Sequence 41 from patent US 5597725. 38 5.5
Z47547 C.crispus complete mitochondrial genome. 38 5.5
Z46224 C.crispus Mitochondrion gene for large subunit ribosomal... 38 5.5
U84139 Bos taurus structure-specific recognition protein 1 (SSR... 38 5.5
AL010134 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *... 38 5.5
Z99281 Caenorhabditis elegans cosmid Y57G11C 38 5.5
Z35597 Caenorhabditis elegans cosmid C36E8 38 5.5
AF003386 Caenorhabditis elegans cosmid F59E12. 38 5.5
Z30950 C.crispus mitochondrial gene for small subunit ribosomal... 38 5.5
AF026208 Caenorhabditis elegans cosmid F52D1. 38 5.5
Z69712 Human DNA sequence from cosmid N12G10, on chromosome 22q... 38 5.5
Z84495 Human DNA sequence from cosmid LUCA8 38 5.5
L81635 Homo sapiens (subclone 2_c11 from P1 H33) DNA sequence, ... 38 5.5
Z68754 Human DNA sequence from cosmid cE78H10, on chromosome 22... 38 5.5
L34060 Homo sapiens cadherin-8 mRNA, complete cds. 38 5.5
AC002378 Human PAC clone DJ438O4 from 22q12.1-qter, complete se... 38 5.5
AC002124 Human BAC clone RG180O01 from 7p15-p21, complete seque... 38 5.5
Z93931 Human DNA sequence from PAC 438G17 on chromosome 6q22. C... 38 5.5
AL008907 H.sapiens STS from genomic clone 404F18. 38 5.5
AC004130 Homo sapiens BAC clone RG293F17 from 7p15-p21, complet... 38 5.5
AC004000 Human PAC clone DJ404F18 from Xq23, complete sequence. 38 5.5
AC003683 Homo sapiens Xp22 PAC RPCI1-147H15 (Research Park PAC ... 38 5.5
AC003013 Human PAC clone DJ0205E24 from Xq23, complete sequence. 38 5.5
AC002556 Human Chromosome 11 pac pDJ9j14, complete sequence. 38 5.5
>U51677 Human non-histone chromatin protein HMG1 (HMG1) gene, complete
cds.
Length = 2575
Score = 4129 bits (2083), Expect = 0.0
Identities = 2167/2209 (98%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
Query: 121 ttttctaagaagtgctcagagaggtggaaggtaagagggcttaaaacatgctaacaaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttttctaagaagtgctcagagaggtggaaggtaagagggcttaaaacatgctaacaaggt 180
Query: 181 aattaaaagacagtttccaattgaggatgcnnnnnnnngcctagttggcattctcgtagt 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 181 aattaaaagacagtttccaattgaggatgcaaaaaaaagcctagttggcattctcgtagt 240
Query: 241 gggacgctattacatagcaaaagacattggttttgaggataatttacttaaatgttacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gggacgctattacatagcaaaagacattggttttgaggataatttacttaaatgttacaa 300
Query: 301 cttaaacttacaaattaattattttgtagaccatgtctgctaaagagaaaggaaaatttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttaaacttacaaattaattattttgtagaccatgtctgctaaagagaaaggaaaatttg 360
Query: 361 aagatatggcaaaagcggacaaggcccgttatgaaagagaaatgaaaacctatatccctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagatatggcaaaagcggacaaggcccgttatgaaagagaaatgaaaacctatatccctc 420
Query: 421 ccaaaggggagacaaaaaagaagttcaaggatcccaatgcacccaagaggcctccgtgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccaaaggggagacaaaaaagaagttcaaggatcccaatgcacccaagaggcctccgtgag 480
Query: 481 tatcttgcctgtttttacttcccagacacgttttacagtagaatctgagagaaatttagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tatcttgcctgtttttacttcccagacacgttttacagtagaatctgagagaaatttagc 540
Query: 541 aagctactttgtcagtttagagtgtaaatgtacaatcaaagtttcttagctaatacttgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aagctactttgtcagtttagagtgtaaatgtacaatcaaagtttcttagctaatacttgt 600
Query: 601 tcatattggttatatttaaatagtataaaattcctgttgggtgggagtgttcccagagca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcatattggttatatttaaatagtataaaattcctgttgggtgggagtgttcccagagca 660
Query: 661 tttgaattagacatttggtctcctttgcccagtgtatctccttttgatctttttatttct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tttgaattagacatttggtctcctttgcccagtgtatctccttttgatctttttatttct 720
Query: 721 tgaaaaatactatccctttgaaatagtgtaattgtagaatgttcatctagggttctagct 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgaaaaatactatccctttgaaatagtgtaattgtagaatgttcatctagggttctagct 780
Query: 781 agtataaattaaatagttgtaaattaagctttggttgtgaaggatatttagtatattata 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agtataaattaaatagttgtaaattaagctttggttgtgaaggatatttagtatattata 840
Query: 841 gtatttgcaccctgtccaatgcatcacagaaattcacaggcagctttaaatagcaatgca 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gtatttgcaccctgtccaatgcatcacagaaattcacaggcagctttaaatagcaatgca 900
Query: 901 gtgtacacctgatagtatttgtttttgtgatctgttaacttaaaatcctaaaattaannn 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gtgtacacctgatagtatttgtttttgtgatctgttaacttaaaatcctaaaattaattt 960
Query: 961 nnnnnnnagttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggaga 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tttttttagttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggaga 1020
Query: 1021 acatcctggcctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacac 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 acatcctggcctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacac 1080
Query: 1081 tgctgcagatgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacga 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tgctgcagatgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacga 1140
Query: 1141 aaaggtaagaagtgtgggtttgcttggtaaaatgatgacaagtacgccagatgtatgatt 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 aaaggtaagaagtgtgggtttgcttggtaaaatgatgacaagtacgccagatgtatgatt 1200
Query: 1201 gtacttagtttgaggtgtaataagtttttagggtaacagctacattaagtatggtgttga 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 gtacttagtttgaggtgtaataagtttttagggtaacagctacattaagtatggtgttga 1260
Query: 1261 tataagtcctcatccttcaaagaatgcagaggaccaaataaattagggnnnnnnngacta 1320
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1261 tataagtcctcatccttcaaagaatgcagaggaccaaataaattagggtttttttgacta 1320
Query: 1321 aaatgtaatcagactcagacaaaggctgtgtacatttatgttggttttgttattccccag 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 aaatgtaatcagactcagacaaaggctgtgtacatttatgttggttttgttattccccag 1380
Query: 1381 tatcttgaagttcatgaaaatgttggtagtcacttcaagtcaaaaatgagcattttcaaa 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 tatcttgaagttcatgaaaatgttggtagtcacttcaagtcaaaaatgagcattttcaaa 1440
Query: 1441 tggcttggcatacagtacaaaaacaggctagacaaagtaatataggctatatttttctta 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 tggcttggcatacagtacaaaaacaggctagacaaagtaatataggctatatttttctta 1500
Query: 1501 gtcatatcctgaaacatttatgttcttttcctttagatactcaaaaaaccacagcatcac 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 gtcatatcctgaaacatttatgttcttttcctttagatactcaaaaaaccacagcatcac 1560
Query: 1561 taagttaaattacaagtctgctgctctgtccagtaaattaataagattaaggaaatctat 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 taagttaaattacaagtctgctgctctgtccagtaaattaataagattaaggaaatctat 1620
Query: 1621 aactcttatagttcagtaaattgaaatattaaatacttaattttcagctttagtcattct 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 aactcttatagttcagtaaattgaaatattaaatacttaattttcagctttagtcattct 1680
Query: 1681 gaaaagtgtttatttctagatgtttcttaacctaattgcatgtttattgacaaattaccn 1740
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 gaaaagtgtttatttctagatgtttcttaacctaattgcatgtttattgacaaattacct 1740
Query: 1741 nnnnnnnnnaagaccacatttcctactaaggattaaggtctgacagtgtaaacctgtaga 1800
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 tttttttttaagaccacatttcctactaaggattaaggtctgacagtgtaaacctgtaga 1800
Query: 1801 gtgcttttttgcattcagaaggtggcagtgtctaccctttaatcaaagtctctacattct 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 gtgcttttttgcattcagaaggtggcagtgtctaccctttaatcaaagtctctacattct 1860
Query: 1861 ggttttaatagagttaggatctggtagataattgcacctcaatgaggcataactttgcaa 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 ggttttaatagagttaggatctggtagataattgcacctcaatgaggcataactttgcaa 1920
Query: 1921 atattagactatgccatttcatgagttatagattgttataatgatcttgtatttttatgt 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 atattagactatgccatttcatgagttatagattgttataatgatcttgtatttttatgt 1980
Query: 1981 tcatttattgaagttctagttatttctggagttgctgtggatctacagatacgtgatatt 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 tcatttattgaagttctagttatttctggagttgctgtggatctacagatacgtgatatt 2040
Query: 2041 ttggtataactagaatcttgatttctttcataaagttctgccatgttctatttctttcct 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 ttggtataactagaatcttgatttctttcataaagttctgccatgttctatttctttcct 2100
Query: 2101 taatcnnnnnnncttccctactgttttatcctccctttgctttggaaggatattgctgca 2160
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 taatctttttttcttccctactgttttatcctccctttgctttggaaggatattgctgca 2160
Query: 2161 tatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtcaagg 2209
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2161 tatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtcaagg 2209
Score = 361 bits (182), Expect = 3e-97
Identities = 210/224 (93%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnntt 2411
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaatt 2411
Query: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagtt 2471
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttgtatagtt 2471
Query: 2472 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2472 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2531
Query: 2532 aaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2532 aaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
>L38477 Mus musculus (clone Clebp-1) high mobility group 1 protein
(HMG-1)
Length = 1225
Score = 353 bits (178), Expect = 7e-95
Identities = 209/224 (93%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnntt 2411
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 746 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaatt 805
Query: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagtt 2471
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 806 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttgtatagtt 865
Query: 2472 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 925
Query: 2532 aaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 926 aaccttgcctggtacagtctgggggttgtaaattggcatggaaa 969
Score = 234 bits (118), Expect = 5e-59
Identities = 142/150 (94%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 74 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcctcatatgcattctttgtg 133
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
|||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 134 caaacttgccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcagag 193
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
|| || ||||||||||||||||||||||||
Sbjct: 194 ttctccaagaagtgctcagagaggtggaag 223
Score = 214 bits (108), Expect = 4e-53
Identities = 138/148 (93%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
||||||||||||||||||| || || |||||||||||||||||||| || |||||||| |
Sbjct: 222 agaccatgtctgctaaagaaaaggggaaatttgaagatatggcaaaggctgacaaggctc 281
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 282 gttatgaaagagaaatgaaaacctacatcccccccaaaggggagaccaaaaagaagttca 341
Query: 448 aggatcccaatgcacccaagaggcctcc 475
|||| |||||||||||||||||||||||
Sbjct: 342 aggaccccaatgcacccaagaggcctcc 369
Score = 186 bits (94), Expect = 1e-44
Identities = 145/162 (89%)
Strand = Plus / Plus
Query: 970 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1029
||||||||||||| | ||||| |||||||| ||||| ||||||||||| || ||||||||
Sbjct: 370 ttcggccttcttcttgttctgttctgagtaccgccccaaaatcaaaggcgagcatcctgg 429
Query: 1030 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1089
| | ||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||
Sbjct: 430 cttatccattggtgatgttgcaaagaaactaggagagatgtggaacaacactgcagcaga 489
Query: 1090 tgacaagcagccttatgaaaagaaggctgcgaagctgaagga 1131
|||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 490 tgacaagcagccctatgagaagaaagctgccaagctgaagga 531
Score = 73.8 bits (37), Expect = 1e-10
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 2145 gaaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgt 2204
||||||||||||||| || ||||||||||||| ||||||||||| |||||||| || ||
Sbjct: 541 gaaggatattgctgcctacagagctaaaggaaaacctgatgcagcgaaaaagggggtggt 600
Query: 2205 caagg 2209
|||||
Sbjct: 601 caagg 605
>X80457 M.musculus HMG1 gene
Length = 2547
Score = 353 bits (178), Expect = 7e-95
Identities = 209/224 (93%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnntt 2411
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2202 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaatt 2261
Query: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagtt 2471
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2262 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttgtatagtt 2321
Query: 2472 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2322 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2381
Query: 2532 aaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2382 aaccttgcctggtacagtctgggggttgtaaattggcatggaaa 2425
Score = 266 bits (134), Expect = 1e-68
Identities = 155/162 (95%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 173 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcctcatatgcattctttgtg 232
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
|||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 233 caaacttgccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcagag 292
Query: 121 ttttctaagaagtgctcagagaggtggaaggtaagagggctt 162
||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttttccaagaagtgctcagagaggtggaaggtaagagggctt 334
Score = 232 bits (117), Expect = 2e-58
Identities = 147/157 (93%)
Strand = Plus / Plus
Query: 327 tagaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggcc 386
|||||||||||||||||||| || || |||||||||||||||||||| || ||||||||
Sbjct: 467 tagaccatgtctgctaaagaaaaggggaaatttgaagatatggcaaaggctgacaaggct 526
Query: 387 cgttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttc 446
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 527 cgttatgaaagagaaatgaaaacctacatcccccccaaaggggagaccaaaaagaagttc 586
Query: 447 aaggatcccaatgcacccaagaggcctccgtgagtat 483
||||| |||||||||||||||||||||||||||||||
Sbjct: 587 aaggaccccaatgcacccaagaggcctccgtgagtat 623
Score = 194 bits (98), Expect = 4e-47
Identities = 161/182 (88%)
Strand = Plus / Plus
Query: 968 agttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcct 1027
||||||||||||||| | ||||| |||||||| ||||| ||||||||||| || ||||||
Sbjct: 1007 agttcggccttcttcttgttctgttctgagtaccgccccaaaatcaaaggcgagcatcct 1066
Query: 1028 ggcctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgca 1087
||| | ||||||||||||||||| |||||||| |||||||||||||| |||||||| |||
Sbjct: 1067 ggcttatccattggtgatgttgcaaagaaactaggagagatgtggaacaacactgcagca 1126
Query: 1088 gatgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaaggta 1147
|||||||||||||| ||||| ||||| ||||| ||||||||||| || || || ||||||
Sbjct: 1127 gatgacaagcagccctatgagaagaaagctgccaagctgaaggagaagtatgagaaggta 1186
Query: 1148 ag 1149
||
Sbjct: 1187 ag 1188
Score = 81.8 bits (41), Expect = 4e-13
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 2141 tttggaaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggag 2200
||||||||||||||||||| || ||||||||||||| ||||||||||| |||||||| |
Sbjct: 1992 tttggaaggatattgctgcctacagagctaaaggaaaacctgatgcagcgaaaaaggggg 2051
Query: 2201 ttgtcaagg 2209
| |||||||
Sbjct: 2052 tggtcaagg 2060
Score = 56.0 bits (28), Expect = 2e-05
Identities = 73/87 (83%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1869 tagagttaggatctggtagataattgcacctcaatgaggcataactttgcaaatattaga 1928
|||| ||||||| ||||| |||||||||| ||| ||||||||||| ||||||||||
Sbjct: 1777 tagaattaggatgtggtatataattgcacttcagtgaggcataacaacacaaatattag- 1835
Query: 1929 ctatgccatttcatgagttatagattg 1955
| || ||||||||||||| |||||||
Sbjct: 1836 -tctgacatttcatgagttgtagattg 1861
Score = 46.1 bits (23), Expect = 0.023
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1791 aacctgtagagtgcttttttgcattcagaaggtggcagt 1829
|||||||||| |||| ||||| ||||||||||||||||
Sbjct: 1699 aacctgtagaatgctgttttgtgttcagaaggtggcagt 1737
>U00431 Mus musculus HMG-1 mRNA, complete cds.
Length = 1308
Score = 353 bits (178), Expect = 7e-95
Identities = 209/224 (93%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnntt 2411
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 818 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaatt 877
Query: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagtt 2471
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 878 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttgtatagtt 937
Query: 2472 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 997
Query: 2532 aaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 998 aaccttgcctggtacagtctgggggttgtaaattggcatggaaa 1041
Score = 234 bits (118), Expect = 5e-59
Identities = 142/150 (94%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 146 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcctcatatgcattctttgtg 205
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
|||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 206 caaacttgccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcagag 265
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
|| || ||||||||||||||||||||||||
Sbjct: 266 ttctccaagaagtgctcagagaggtggaag 295
Score = 214 bits (108), Expect = 4e-53
Identities = 138/148 (93%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
||||||||||||||||||| || || |||||||||||||||||||| || |||||||| |
Sbjct: 294 agaccatgtctgctaaagaaaaggggaaatttgaagatatggcaaaggctgacaaggctc 353
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 354 gttatgaaagagaaatgaaaacctacatcccccccaaaggggagaccaaaaagaagttca 413
Query: 448 aggatcccaatgcacccaagaggcctcc 475
|||| |||||||||||||||||||||||
Sbjct: 414 aggaccccaatgcacccaagaggcctcc 441
Score = 186 bits (94), Expect = 1e-44
Identities = 145/162 (89%)
Strand = Plus / Plus
Query: 970 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1029
||||||||||||| | ||||| |||||||| ||||| ||||||||||| || ||||||||
Sbjct: 442 ttcggccttcttcttgttctgttctgagtaccgccccaaaatcaaaggcgagcatcctgg 501
Query: 1030 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1089
| | ||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||
Sbjct: 502 cttatccattggtgatgttgcaaagaaactaggagagatgtggaacaacactgcagcaga 561
Query: 1090 tgacaagcagccttatgaaaagaaggctgcgaagctgaagga 1131
|||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 562 tgacaagcagccctatgagaagaaagctgccaagctgaagga 603
Score = 73.8 bits (37), Expect = 1e-10
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 2145 gaaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgt 2204
||||||||||||||| || ||||||||||||| ||||||||||| |||||||| || ||
Sbjct: 613 gaaggatattgctgcctacagagctaaaggaaaacctgatgcagcgaaaaagggggtggt 672
Query: 2205 caagg 2209
|||||
Sbjct: 673 caagg 677
>L08048 Human non-histone chromosomal protein (HMG-1) retropseudogene.
Length = 1814
Score = 349 bits (176), Expect = 1e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 970 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1013
Query: 1030 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1073
Query: 1090 tgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaagg 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 tgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaagg 1129
Score = 337 bits (170), Expect = 4e-90
Identities = 207/224 (92%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnntt 2411
||||||||||||||||||||||||||||||||||| |||||| |||||||| ||
Sbjct: 1333 cttgtctataaagcatttaacccccctgtacacaattcactctttttaaagaaaaaaatt 1392
Query: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagtt 2471
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1393 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttgtatagtt 1452
Query: 2472 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1453 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 1512
Query: 2532 aaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1513 aactttgcctggtacagtatgggggttgtaaattggcatggaaa 1556
Score = 289 bits (146), Expect = 9e-76
Identities = 149/150 (99%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 658 atgggcaaaggagatcctaagaagccgacaggcaaaatgtcatcatatgcattttttgtg 717
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 777
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
||||||||||||||||||||||||||||||
Sbjct: 778 ttttctaagaagtgctcagagaggtggaag 807
Score = 278 bits (140), Expect = 3e-72
Identities = 143/144 (99%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 806 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaggcggacaaggccc 865
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 925
Query: 448 aggatcccaatgcacccaagaggc 471
||||||||||||||||||||||||
Sbjct: 926 aggatcccaatgcacccaagaggc 949
Score = 119 bits (60), Expect = 2e-24
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 2146 aaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtc 2205
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 aaggatatagctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtc 1185
Query: 2206 aagg 2209
||||
Sbjct: 1186 aagg 1189
>X12597 Human mRNA for high mobility group-1 protein (HMG-1).
Length = 1009
Score = 349 bits (176), Expect = 1e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 970 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 408
Query: 1030 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 468
Query: 1090 tgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaagg 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaagg 524
Score = 347 bits (175), Expect = 4e-93
Identities = 210/225 (93%), Gaps = 1/225 (0%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactcc-ttttaaagnnnnnnnt 2410
||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 727 cttgtctataaagcatttaacccccctgtacacaactcactcccttttaaagaaaaaaat 786
Query: 2411 tgaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagt 2470
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 787 tgaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttgtatagt 846
Query: 2471 taacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccac 2530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 taacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccac 906
Query: 2531 taaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 taaccttgcctggtacagtatgggggttgtaaattggcatggaaa 951
Score = 297 bits (150), Expect = 4e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 112
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 172
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
||||||||||||||||||||||||||||||
Sbjct: 173 ttttctaagaagtgctcagagaggtggaag 202
Score = 293 bits (148), Expect = 6e-77
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 260
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 320
Query: 448 aggatcccaatgcacccaagaggcctcc 475
||||||||||||||||||||||||||||
Sbjct: 321 aggatcccaatgcacccaagaggcctcc 348
Score = 119 bits (60), Expect = 2e-24
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 2146 aaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtc 2205
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aaggatatagctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtc 580
Query: 2206 aagg 2209
||||
Sbjct: 581 aagg 584
>M64986 Rat amphoterin mRNA, complete cds.
Length = 1225
Score = 345 bits (174), Expect = 2e-92
Identities = 208/224 (92%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnntt 2411
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 796 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaatt 855
Query: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagtt 2471
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 856 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttgtatagtt 915
Query: 2472 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2531
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 916 aacacactaccgaatgtgtctttagctagccctgtcctggtggtattttcaatagccact 975
Query: 2532 aaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 976 aaccttgcctggtacagtctgggggttgtaaattggcatggaaa 1019
Score = 226 bits (114), Expect = 1e-56
Identities = 141/150 (94%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 123 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcctcatatgcattctttgtg 182
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
||||| || ||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 183 caaacctgccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcagag 242
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
|| || ||||||||||||||||||||||||
Sbjct: 243 ttctccaagaagtgctcagagaggtggaag 272
Score = 210 bits (106), Expect = 7e-52
Identities = 148/162 (91%)
Strand = Plus / Plus
Query: 970 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1029
||||||||||||| | ||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct: 419 ttcggccttcttcttgttctgttctgagtaccgcccaaaaatcaaaggcgagcatcctgg 478
Query: 1030 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1089
| | |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 479 cttatccattggtgatgttgcgaagaaactaggagagatgtggaacaacactgctgcgga 538
Query: 1090 tgacaagcagccttatgaaaagaaggctgcgaagctgaagga 1131
|||||||||||| |||||||||||||| || |||||||||||
Sbjct: 539 tgacaagcagccctatgaaaagaaggccgccaagctgaagga 580
Score = 206 bits (104), Expect = 1e-50
Identities = 137/148 (92%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
||||||||||||||||||| || || |||||||||||||||||||| || |||||||| |
Sbjct: 271 agaccatgtctgctaaagaaaaggggaaatttgaagatatggcaaaggctgacaaggctc 330
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 331 gttatgaaagagaaatgaaaacctacatcccccccaaaggggagaccaaaaagaagttca 390
Query: 448 aggatcccaatgcacccaagaggcctcc 475
|||| |||||||| ||||||||||||||
Sbjct: 391 aggaccccaatgcccccaagaggcctcc 418
Score = 73.8 bits (37), Expect = 1e-10
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 2145 gaaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgt 2204
||||||||||||||| || ||||||||||||| ||||||||||| |||||||| || ||
Sbjct: 590 gaaggatattgctgcctacagagctaaaggaaaacctgatgcagcgaaaaagggggtggt 649
Query: 2205 caagg 2209
|||||
Sbjct: 650 caagg 654
>Z11997 M.musculus mRNA for non-histone chromosomal high-mobility
group 1
Length = 2231
Score = 345 bits (174), Expect = 2e-92
Identities = 208/224 (92%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnntt 2411
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 746 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaatt 805
Query: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagtt 2471
||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 806 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttggatagtt 865
Query: 2472 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 925
Query: 2532 aaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 926 aaccttgcctggtacagtctgggggttgtaaattggcatggaaa 969
Score = 242 bits (122), Expect = 2e-61
Identities = 143/150 (95%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 73 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcctcatatgcattctttgtg 132
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
|||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 133 caaacttgccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcagag 192
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
||||| ||||||||||||||||||||||||
Sbjct: 193 ttttccaagaagtgctcagagaggtggaag 222
Score = 214 bits (108), Expect = 4e-53
Identities = 138/148 (93%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
||||||||||||||||||| || || |||||||||||||||||||| || |||||||| |
Sbjct: 221 agaccatgtctgctaaagaaaaggggaaatttgaagatatggcaaaggctgacaaggctc 280
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 281 gttatgaaagagaaatgaaaacctacatcccccccaaaggggagaccaaaaagaagttca 340
Query: 448 aggatcccaatgcacccaagaggcctcc 475
|||| |||||||||||||||||||||||
Sbjct: 341 aggaccccaatgcacccaagaggcctcc 368
Score = 186 bits (94), Expect = 1e-44
Identities = 145/162 (89%)
Strand = Plus / Plus
Query: 970 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1029
||||||||||||| | ||||| |||||||| ||||| ||||||||||| || ||||||||
Sbjct: 369 ttcggccttcttcttgttctgttctgagtaccgccccaaaatcaaaggcgagcatcctgg 428
Query: 1030 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1089
| | ||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||
Sbjct: 429 cttatccattggtgatgttgcaaagaaactaggagagatgtggaacaacactgcagcaga 488
Query: 1090 tgacaagcagccttatgaaaagaaggctgcgaagctgaagga 1131
|||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 489 tgacaagcagccctatgagaagaaagctgccaagctgaagga 530
Score = 73.8 bits (37), Expect = 1e-10
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 2145 gaaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgt 2204
||||||||||||||| || ||||||||||||| ||||||||||| |||||||| || ||
Sbjct: 540 gaaggatattgctgcctacagagctaaaggaaaacctgatgcagcgaaaaagggggtggt 599
Query: 2205 caagg 2209
|||||
Sbjct: 600 caagg 604
>D63874 Human mRNA for HMG-1, complete cds.
Length = 1194
Score = 345 bits (174), Expect = 2e-92
Identities = 208/224 (92%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnntt 2411
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 751 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaatt 810
Query: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagtt 2471
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 811 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttgtatagtt 870
Query: 2472 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2531
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 871 aacacactaccgaatgtgtctttagatagccctgtcctggtggtatcttcaatagccact 930
Query: 2532 aaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 931 aaccctgcctggtacagtatgggggttgtaaattggcatggaaa 974
Score = 333 bits (168), Expect = 7e-89
Identities = 174/176 (98%)
Strand = Plus / Plus
Query: 970 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 432
Query: 1030 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 492
Query: 1090 tgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaagg 1145
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 493 tgacaagcagccttatgaaaagaaggctgaaaagctgaaggaaaaatacgaaaagg 548
Score = 293 bits (148), Expect = 6e-77
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 284
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 344
Query: 448 aggatcccaatgcacccaagaggcctcc 475
||||||||||||||||||||||||||||
Sbjct: 345 aggatcccaatgcacccaagaggcctcc 372
Score = 281 bits (142), Expect = 2e-73
Identities = 148/150 (98%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 77 atgggcaaaggagatcctaagaagccgagacggaaaatgtcatcatatgcattttttgtg 136
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 196
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
||||||||||||||||||||||||||||||
Sbjct: 197 ttttctaagaagtgctcagagaggtggaag 226
Score = 127 bits (64), Expect = 8e-27
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 2146 aaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtc 2205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtc 604
Query: 2206 aagg 2209
||||
Sbjct: 605 aagg 608
>Z95115 Human DNA sequence from BAC 445C9 on chromosome 22q12.1.
Length = 131398
Score = 337 bits (170), Expect = 4e-90
Identities = 207/224 (92%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnntt 2411
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 58656 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaatt 58715
Query: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagtt 2471
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 58716 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttgtatagtt 58775
Query: 2472 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2531
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 58776 aacacactaccgaatgtgtctttagatagccctgtcctgatggtattttcaatagccgct 58835
Query: 2532 aaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 58836 aaccttgcctggtacagtatgggggctgtaaattggcatggaaa 58879
Score = 325 bits (164), Expect = 2e-86
Identities = 173/176 (98%)
Strand = Plus / Plus
Query: 970 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1029
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 58290 ttcggccttcttcctgttctgctctgcgtatcgcccaaaaatcaaaggagaacatcctgg 58349
Query: 1030 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1089
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 58350 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgccgcaga 58409
Query: 1090 tgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaagg 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58410 tgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaagg 58465
Score = 254 bits (128), Expect = 5e-65
Identities = 143/148 (96%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 58142 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaggcggacaaggccc 58201
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58202 attacgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 58261
Query: 448 aggatcccaatgcacccaagaggcctcc 475
||||||| ||||||||||||||| ||||
Sbjct: 58262 aggatccgaatgcacccaagaggactcc 58289
Score = 250 bits (126), Expect = 8e-64
Identities = 141/146 (96%)
Strand = Plus / Plus
Query: 5 gcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtgcaaa 64
||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 57998 gcaaaggagatcctaagaagctgagaggcaaaatgtcatcacatgcattttttgggcaaa 58057
Query: 65 cttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagagtttt 124
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 58058 cttgtcgggaggcgcataagaagaagcacccagatgcttcagtcaacctctcagagtttt 58117
Query: 125 ctaagaagtgctcagagaggtggaag 150
||||||||||||||||||||||||||
Sbjct: 58118 ctaagaagtgctcagagaggtggaag 58143
Score = 127 bits (64), Expect = 8e-27
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 2146 aaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtc 2205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58462 aaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtc 58521
Query: 2206 aagg 2209
||||
Sbjct: 58522 aagg 58525
>X12796 Bovine mRNA for high mobility group 1 (HMG1) protein
Length = 1236
Score = 335 bits (169), Expect = 2e-89
Identities = 209/226 (92%), Gaps = 2/226 (0%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnn-- 2409
|||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 794 cttgtctataaagcatttaacccccctgtacacacctcactccttttaaagaaaaaaaaa 853
Query: 2410 ttgaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatag 2469
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 854 ttgaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttgtatag 913
Query: 2470 ttaacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagcca 2529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 ttaacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagcca 973
Query: 2530 ctaaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 ctaaccttgcctggtacagtatgggggttgtaaattggcatggaaa 1019
Score = 258 bits (130), Expect = 3e-66
Identities = 145/150 (96%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 119 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattctttgtg 178
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
|||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 179 caaacttgccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcagag 238
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
||||||||||||||||||||||||||||||
Sbjct: 239 ttttctaagaagtgctcagagaggtggaag 268
Score = 238 bits (120), Expect = 3e-60
Identities = 141/148 (95%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 267 agaccatgtctgctaaagagaaaggaaaatttgaagacatggcaaaggcggacaaggccc 326
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
|||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||
Sbjct: 327 gttatgaaagagaaatgaaaacttatattcctcctaaaggggaaacaaaaaagaagttca 386
Query: 448 aggatcccaatgcacccaagaggcctcc 475
|||||||||||||||| |||||||||||
Sbjct: 387 aggatcccaatgcacctaagaggcctcc 414
Score = 230 bits (116), Expect = 7e-58
Identities = 161/176 (91%)
Strand = Plus / Plus
Query: 970 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1029
||||||||| ||| | || || ||||||||||| |||||||||||||| |||||||||||
Sbjct: 415 ttcggcctttttcttgttttgttctgagtatcgtccaaaaatcaaaggcgaacatcctgg 474
Query: 1030 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1089
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 475 cctgtctattggtgatgttgcaaagaaactgggagagatgtggaataacactgctgcgga 534
Query: 1090 tgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaagg 1145
||| |||||||||||||| ||||||||||| |||||||||||||| || |||||||
Sbjct: 535 tgataagcagccttatgagaagaaggctgctaagctgaaggaaaagtatgaaaagg 590
Score = 95.6 bits (48), Expect = 3e-17
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 2146 aaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtc 2205
||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 587 aaggatattgccgcataccgagctaaagggaaacctgatgcagcaaaaaagggagttgtc 646
Query: 2206 aagg 2209
||||
Sbjct: 647 aagg 650
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2323 taagttggttctagcgcag 2341
|||||||||||||||||||
Sbjct: 764 taagttggttctagcgcag 782
>M26110 Bovine high-mobility-group protein (HMG-1) mRNA, 3' end.
Length = 791
Score = 327 bits (165), Expect = 4e-87
Identities = 208/226 (92%), Gaps = 2/226 (0%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnn-- 2409
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaaaa 399
Query: 2410 ttgaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatag 2469
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 400 ttaaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttgtatag 459
Query: 2470 ttaacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagcca 2529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttaacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagcca 519
Query: 2530 ctaaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ctaaccctgcctggtacagtatgggggttgtaaattggcatggaaa 565
Score = 163 bits (82), Expect = 1e-37
Identities = 106/114 (92%)
Strand = Plus / Plus
Query: 1032 tgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcagatg 1091
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 14 tgtctattggtgatgttgcaaagaaactgggagagatgtggaataacactgctgcggatg 73
Query: 1092 acaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaagg 1145
| |||||||||||||| ||||||||||| |||||||||||||| || |||||||
Sbjct: 74 ataagcagccttatgagaagaaggctgctaagctgaaggaaaagtatgaaaagg 127
Score = 95.6 bits (48), Expect = 3e-17
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 2146 aaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtc 2205
||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 124 aaggatattgccgcataccgagccaaagggaagcctgatgcagcaaaaaagggagttgtc 183
Query: 2206 aagg 2209
||||
Sbjct: 184 aagg 187
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2323 taagttggttctagcgcag 2341
|||||||||||||||||||
Sbjct: 301 taagttggttctagcgcag 319
>AF009343 Mus musculus HMG-like protein (Trf) mRNA, complete cds.
Length = 1328
Score = 305 bits (154), Expect = 2e-80
Identities = 197/216 (91%)
Strand = Plus / Plus
Query: 2360 taaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnnttgaaatgta 2419
||||||||||||||||||| | ||| |||||||||||||||| ||||||||||
Sbjct: 814 taaagcatttaacccccctcttcacttctcactccttttaaagaaaaaaattgaaatgta 873
Query: 2420 aggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagttaacacact 2479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 874 aggctgtgtaagatttgtttttaaactgtacagtgtctttttctgtatagttaacacact 933
Query: 2480 accgaatgtgtctttagatagccctgtcctggtggtattttcaatagccactaaccttgc 2539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 accgaatgtgtctttagatagccctgtcctggtggtattttcaatagccactaaccttgc 993
Query: 2540 ctggtacagtatgggggttgtaaattggcatggaaa 2575
|||||||||| |||||||||||||||||||||||||
Sbjct: 994 ctggtacagtctgggggttgtaaattggcatggaaa 1029
Score = 220 bits (111), Expect = 7e-55
Identities = 141/150 (94%), Gaps = 2/150 (1%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
|||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct: 137 atgggcaaaggagatcctaagaagccgaga--caaaatgtcctcatatgcattctttgtg 194
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
|||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 195 caaacttgccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcagag 254
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
||||| ||||||||||||||||||||||||
Sbjct: 255 ttttccaagaagtgctcagagaggtggaag 284
Score = 176 bits (89), Expect = 9e-42
Identities = 134/148 (90%), Gaps = 2/148 (1%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
||||||||||||||||||| || || |||||||||||||||||||| || |||||||| |
Sbjct: 283 agaccatgtctgctaaagaaaaggggaaatttgaagatatggcaaaggctgacaaggctc 342
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
|||||| |||||||||||||||||| | ||| |||||| |||||| |||||||||||||
Sbjct: 343 gttatggaagagaaatgaaaacctacaccccccccaaa--ggagaccaaaaagaagttca 400
Query: 448 aggatcccaatgcacccaagaggcctcc 475
|||| |||||||||||||||||||||||
Sbjct: 401 aggaccccaatgcacccaagaggcctcc 428
Score = 170 bits (86), Expect = 6e-40
Identities = 143/162 (88%)
Strand = Plus / Plus
Query: 970 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1029
||||||||||||| | ||||| |||||||| ||||| ||||||||||| || |||||| |
Sbjct: 429 ttcggccttcttcttgttctgttctgagtaccgccccaaaatcaaaggcgagcatcctcg 488
Query: 1030 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1089
| | |||||||||||| |||| |||||||| |||||||||||||| |||||||| |||||
Sbjct: 489 cttatccattggtgatcttgcaaagaaactaggagagatgtggaacaacactgcagcaga 548
Query: 1090 tgacaagcagccttatgaaaagaaggctgcgaagctgaagga 1131
|||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 549 tgacaagcagccctatgagaagaaagctgccaagctgaagga 590
Score = 73.8 bits (37), Expect = 1e-10
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 2145 gaaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgt 2204
||||||||||||||| || ||||||||||||| ||||||||||| |||||||| || ||
Sbjct: 600 gaaggatattgctgcctacagagctaaaggaaaacctgatgcagcgaaaaagggggtggt 659
Query: 2205 caagg 2209
|||||
Sbjct: 660 caagg 664
>M21683;M21684 Pig nonhistone protein HMG1 mRNA, complete cds.
Length = 2192
Score = 303 bits (153), Expect = 6e-80
Identities = 209/227 (92%), Gaps = 4/227 (1%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccc-tgtacacaactcactccttttaaagnnnnnnn- 2409
|||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 682 cttgtctataaagcatttaaccccccctgtacacaactcactccttttaaagaaaaaaaa 741
Query: 2410 ttgaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnn-gtata 2468
||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 742 ttgaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcttttttttgtata 801
Query: 2469 gttaacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagcc 2528
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gttaacacactaccgaatgtg-ctttagatagccctgtcctggtggtattttcaatagcc 860
Query: 2529 actaaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 actaaccttgcctggtacagtatgggggttgtaaattggcatggaaa 907
Score = 274 bits (138), Expect = 5e-71
Identities = 147/150 (98%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattctttgtg 68
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 caaacttgccgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 128
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
|||||||||||||||||||| |||||||||
Sbjct: 129 ttttctaagaagtgctcagaaaggtggaag 158
Score = 246 bits (124), Expect = 1e-62
Identities = 142/148 (95%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 157 agaccatgtctgctaaagagaaaggaaaatttgaagacatggcaaaggcggacaaggccc 216
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
|||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||
Sbjct: 217 gttatgaaagagaaatgaaaacttacatacctcctaaaggggagacaaaaaagaagttca 276
Query: 448 aggatcccaatgcacccaagaggcctcc 475
||||||||||||||||||||||||||||
Sbjct: 277 aggatcccaatgcacccaagaggcctcc 304
Score = 238 bits (120), Expect = 3e-60
Identities = 162/176 (92%)
Strand = Plus / Plus
Query: 970 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1029
||||||||| ||| | || || ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 305 ttcggcctttttcttgttttgttctgagtatcgtccaaaaatcaaaggagagcatcctgg 364
Query: 1030 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1089
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 365 cctatccattggtgatgttgcaaagaaactgggagagatgtggaataacaccgctgcaga 424
Query: 1090 tgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaagg 1145
||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 425 tgacaagcacccttatgaaaagaaggctgctaagctgaaggagaagtacgaaaagg 480
Score = 103 bits (52), Expect = 1e-19
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 2146 aaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtc 2205
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 477 aaggatattgctgcataccgagctaaagggaagcctgatgcagcaaaaaagggagtcgtc 536
Query: 2206 aagg 2209
||||
Sbjct: 537 aagg 540
>L13805 Homo sapiens (clone 06) high mobility group 1 protein mRNA
Length = 273
Score = 260 bits (131), Expect = 8e-67
Identities = 166/181 (91%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnntt 2411
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 85 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaatt 144
Query: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagtt 2471
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 145 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttgtatagtt 204
Query: 2472 aacacactaccgaatgtgtctttagatagccctgtcctggtggtatttt-caatagccac 2530
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttgcaatagccac 264
Query: 2531 t 2531
|
Sbjct: 265 t 265
>D14718 Human chromosomal protein HMG1 related gene.
Length = 2140
Score = 252 bits (127), Expect = 2e-64
Identities = 194/221 (87%)
Strand = Plus / Plus
Query: 2355 gtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnnttgaa 2414
|||||||||||||||||||| |||| ||||| ||||||||||||||| | |||
Sbjct: 1582 gtctataaagcatttaaccctactgttcacaagtcactccttttaaagaaaaaaatggaa 1641
Query: 2415 atgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagttaac 2474
||||||| ||||||| |||||||||||||||||||||||||| || |||||||
Sbjct: 1642 atgtaagtctgtgtaggatttgtttttaaactgtacagtgtctttttttataaagttaac 1701
Query: 2475 acactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccactaac 2534
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 1702 acactaccgaatgtgtctttagatagccctctcctggtggtgttttcaatagccactaac 1761
Query: 2535 cttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
|||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1762 cttgcctggtgcagtatgcgggttgtaaattggcatggaaa 1802
Score = 244 bits (123), Expect = 5e-62
Identities = 141/147 (95%)
Strand = Plus / Plus
Query: 4 ggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtgcaa 63
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 922 ggcaaaggagattctaagaagccaagaggcaaaatgtcatcatatgcattttttgtgcaa 981
Query: 64 acttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagagttt 123
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 982 acttgtcgggaagagcataagaagcagcacccagatgcttcagtcaacttctcagagttt 1041
Query: 124 tctaagaagtgctcagagaggtggaag 150
|||||||| |||||||||||||||||
Sbjct: 1042 tctaagaaaggctcagagaggtggaag 1068
Score = 230 bits (116), Expect = 7e-58
Identities = 141/148 (95%), Gaps = 1/148 (0%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
|||||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||
Sbjct: 1067 agaccatgtctgctaaagagaaaggacaatttgaagatatggcaaaggtg-acaaggccc 1125
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1126 attatgaaagagaagtgaaaacctaaatccctcccaaaggggagacaaaaaagaagttca 1185
Query: 448 aggatcccaatgcacccaagaggcctcc 475
||||||||||||||||||||||||||||
Sbjct: 1186 aggatcccaatgcacccaagaggcctcc 1213
Score = 222 bits (112), Expect = 2e-55
Identities = 157/172 (91%)
Strand = Plus / Plus
Query: 974 gccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctggcctg 1033
||||| ||||| |||||||||||||||| ||||||||| ||||||||||| | |||||||
Sbjct: 1218 gcctttttcctgttctgctctgagtatcacccaaaaattaaaggagaacaacttggcctg 1277
Query: 1034 tccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcagatgac 1093
||||| ||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1278 cccattagtgatgtcgtgaagaaactgggagagatgtggaataacactgctgcagaagac 1337
Query: 1094 aagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaagg 1145
|||||||||| ||||||||||||||| ||||| |||||||||||| ||||||
Sbjct: 1338 aagcagccttgtgaaaagaaggctgcaaagctaaaggaaaaatacaaaaagg 1389
Score = 95.6 bits (48), Expect = 3e-17
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 2146 aaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtc 2205
|||||||||||||||||| |||||||||| |||||||||||||||||||||||| || ||
Sbjct: 1386 aaggatattgctgcatattgagctaaagggaagcctgatgcagcaaaaaagggatttatc 1445
Query: 2206 aagg 2209
||||
Sbjct: 1446 aagg 1449
>Y00365 Chinese hamster HMG-1 gene for high mobility group protein 1
Length = 2058
Score = 246 bits (124), Expect = 1e-62
Identities = 163/176 (92%)
Strand = Plus / Plus
Query: 970 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1029
||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 192 ttcggccttcttcttgttctgttctgagtatcgcccaaaaatcaaaggagaacatccagg 251
Query: 1030 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1089
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 252 gctgtccattggtgatgttgcaaagaaactgggagagatgtggaacaacactgctgcaga 311
Query: 1090 tgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaagg 1145
|||||||||||| ||||||||||||||||| || |||||||| || || |||||||
Sbjct: 312 tgacaagcagccctatgaaaagaaggctgctaaactgaaggagaagtatgaaaagg 367
Score = 198 bits (100), Expect = 3e-48
Identities = 136/148 (91%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
||||||||||||||||||| || ||||||||||| || |||||||| || ||||| || |
Sbjct: 44 agaccatgtctgctaaagaaaagggaaaatttgaggacatggcaaaggctgacaaagctc 103
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 104 gttatgaaagagaaatgaaaacctacatcccccccaaaggggagaccaaaaagaagttca 163
Query: 448 aggatcccaatgcacccaagaggcctcc 475
|||| |||||||||||||||||||||||
Sbjct: 164 aggaccccaatgcacccaagaggcctcc 191
Score = 117 bits (59), Expect = 7e-24
Identities = 89/99 (89%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 2360 taaagcatttaacccccctgtacacaactcactccttttaaag--nnnnnnnttgaaatg 2417
||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 599 taaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaaaattgaa-tg 657
Query: 2418 taaggctgtgtaagatttgtttttaaactgtacagtgtc 2456
|||||||||||||||||||||||||||||||||||||||
Sbjct: 658 taaggctgtgtaagatttgtttttaaactgtacagtgtc 696
Score = 117 bits (59), Expect = 7e-24
Identities = 98/107 (91%), Gaps = 3/107 (2%)
Strand = Plus / Plus
Query: 2469 gttaacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagcc 2528
|||||||||||||||| |||||||| ||| | ||||||||||||||||||||||| ||
Sbjct: 709 gttaacacactaccga-tgtgtcttg-gatggtcctgtcctggtggtattttcaatgacc 766
Query: 2529 actaaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
|||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 767 actaacct-gcctggtacagtctgggggttgtaaattggcatggaaa 812
Score = 65.9 bits (33), Expect = 2e-08
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 106 gtcaacttctcagagttttctaagaagtgctcagagaggtggaag 150
||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 1 gtcaacttctcagagttctcgaagaagtgctcagaaaggtggaag 45
Score = 58.0 bits (29), Expect = 6e-06
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 2146 aaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaaggg 2198
|||||||||||||| || ||||||||||||| || |||||||| ||||||||
Sbjct: 364 aaggatattgctgcttacagagctaaaggaaaacccgatgcagcgaaaaaggg 416
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2323 taagttggttctagcgcag 2341
|||||||||||||||||||
Sbjct: 541 taagttggttctagcgcag 559
>M63852 Rat high mobility group 1 protein synthetic gene, complete
cds.
Length = 924
Score = 226 bits (114), Expect = 1e-56
Identities = 141/150 (94%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 89 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcctcatatgcattctttgtg 148
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
||||| || ||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 149 caaacctgccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcagag 208
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
|| || ||||||||||||||||||||||||
Sbjct: 209 ttctccaagaagtgctcagagaggtggaag 238
Score = 206 bits (104), Expect = 1e-50
Identities = 137/148 (92%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
||||||||||||||||||| || || |||||||||||||||||||| || |||||||| |
Sbjct: 237 agaccatgtctgctaaagaaaaggggaaatttgaagatatggcaaaggctgacaaggctc 296
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 297 gttatgaaagagaaatgaaaacctacatcccccccaaaggggagaccaaaaagaagttca 356
Query: 448 aggatcccaatgcacccaagaggcctcc 475
|||| |||||||| ||||||||||||||
Sbjct: 357 aggaccccaatgcccccaagaggcctcc 384
Score = 202 bits (102), Expect = 2e-49
Identities = 147/162 (90%)
Strand = Plus / Plus
Query: 970 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1029
||||||||||||| | ||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct: 385 ttcggccttcttcttgttctgttctgagtaccgcccaaaaatcaaaggcgagcatcctgg 444
Query: 1030 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1089
| | |||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||
Sbjct: 445 cttatccattggtgatgttgcgaagaaattaggagagatgtggaacaacactgctgcgga 504
Query: 1090 tgacaagcagccttatgaaaagaaggctgcgaagctgaagga 1131
|||||||||||| |||||||||||||| || |||||||||||
Sbjct: 505 tgacaagcagccctatgaaaagaaggccgccaagctgaagga 546
Score = 167 bits (84), Expect = 9e-39
Identities = 98/105 (93%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnntt 2411
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 762 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaatt 821
Query: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtc 2456
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtc 866
Score = 73.8 bits (37), Expect = 1e-10
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 2145 gaaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgt 2204
||||||||||||||| || ||||||||||||| ||||||||||| |||||||| || ||
Sbjct: 556 gaaggatattgctgcctacagagctaaaggaaaacctgatgcagcgaaaaagggggtggt 615
Query: 2205 caagg 2209
|||||
Sbjct: 616 caagg 620
>Y00463 Rat mRNA for high mobility group protein HMG1
Length = 825
Score = 226 bits (114), Expect = 1e-56
Identities = 141/150 (94%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 28 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcctcatatgcattctttgtg 87
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
||||| || ||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 88 caaacctgccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcagag 147
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
|| || ||||||||||||||||||||||||
Sbjct: 148 ttctccaagaagtgctcagagaggtggaag 177
Score = 206 bits (104), Expect = 1e-50
Identities = 137/148 (92%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
||||||||||||||||||| || || |||||||||||||||||||| || |||||||| |
Sbjct: 176 agaccatgtctgctaaagaaaaggggaaatttgaagatatggcaaaggctgacaaggctc 235
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 236 gttatgaaagagaaatgaaaacctacatcccccccaaaggggagaccaaaaagaagttca 295
Query: 448 aggatcccaatgcacccaagaggcctcc 475
|||| |||||||| ||||||||||||||
Sbjct: 296 aggaccccaatgcccccaagaggcctcc 323
Score = 202 bits (102), Expect = 2e-49
Identities = 147/162 (90%)
Strand = Plus / Plus
Query: 970 ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1029
||||||||||||| | ||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct: 324 ttcggccttcttcttgttctgttctgagtaccgcccaaaaatcaaaggcgagcatcctgg 383
Query: 1030 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1089
| | |||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||
Sbjct: 384 cttatccattggtgatgttgcgaagaaattaggagagatgtggaacaacactgctgcgga 443
Query: 1090 tgacaagcagccttatgaaaagaaggctgcgaagctgaagga 1131
|||||||||||| |||||||||||||| || |||||||||||
Sbjct: 444 tgacaagcagccctatgaaaagaaggccgccaagctgaagga 485
Score = 167 bits (84), Expect = 9e-39
Identities = 98/105 (93%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnntt 2411
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 701 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaatt 760
Query: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtc 2456
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtc 805
Score = 73.8 bits (37), Expect = 1e-10
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 2145 gaaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgt 2204
||||||||||||||| || ||||||||||||| ||||||||||| |||||||| || ||
Sbjct: 495 gaaggatattgctgcctacagagctaaaggaaaacctgatgcagcgaaaaagggggtggt 554
Query: 2205 caagg 2209
|||||
Sbjct: 555 caagg 559
>X80466 M.musculus HMG1-R-227 gene
Length = 184
Score = 210 bits (106), Expect = 7e-52
Identities = 130/138 (94%)
Strand = Plus / Plus
Query: 13 gatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtgcaaacttgtcgg 72
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 1 gatcctaagaagccgagaggcaaaatgtcctcatatgcattctttgtgcaaacttgccgg 60
Query: 73 gaggagcataagaagaagcacccagatgcttcagtcaacttctcagagttttctaagaag 132
|||||||| |||||||||||||| |||||||| ||||||||||||||||| || ||||||
Sbjct: 61 gaggagcacaagaagaagcacccggatgcttctgtcaacttctcagagttctccaagaag 120
Query: 133 tgctcagagaggtggaag 150
||||||||||||||||||
Sbjct: 121 tgctcagagaggtggaag 138
Score = 67.9 bits (34), Expect = 6e-09
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaa 373
||||||||||||||||||| || || ||||||||||||||||||||
Sbjct: 137 agaccatgtctgctaaagaaaaggggaaatttgaagatatggcaaa 182
>X80462 M.musculus HMG1-R-154 gene
Length = 190
Score = 184 bits (93), Expect = 4e-44
Identities = 135/149 (90%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcctcatatgcgctctttgtg 60
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
|||| || |||||||||| |||||||||||||| |||||||| ||||||||||||| |
Sbjct: 61 aaaacctgctgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcaggg 120
Query: 121 ttttctaagaagtgctcagagaggtggaa 149
|| || |||||||||||||||||||||||
Sbjct: 121 ttctccaagaagtgctcagagaggtggaa 149
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 330 accatgtctgctaaagagaaaggaaaatttgaagatatgg 369
||||||||||||||||| || || |||||||||| |||||
Sbjct: 151 accatgtctgctaaagaaaaggggaaatttgaaggtatgg 190
>X80461 M.musculus HMG1-R-145 gene
Length = 196
Score = 147 bits (74), Expect = 8e-33
Identities = 126/142 (88%), Gaps = 1/142 (0%)
Strand = Plus / Plus
Query: 9 aggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtgcaaacttg 68
|||||||||||||||||| ||||||| |||||| | ||||||||| ||||||||||| ||
Sbjct: 9 aggagatcctaagaagccaagaggcacaatgtccttatatgcattctttgtgcaaacctg 68
Query: 69 tcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagagttttctaa 128
||||||||||| | || || |||||||||||||| ||||||||||||||| | || ||
Sbjct: 69 ccgggaggagcacagga-gagacacccagatgcttctgtcaacttctcagagctctccaa 127
Query: 129 gaagtgctcagagaggtggaag 150
||||||||||||||||||||||
Sbjct: 128 gaagtgctcagagaggtggaag 149
Score = 58.0 bits (29), Expect = 6e-06
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 332 catgtctgctaaagagaaaggaaaatttgaagatatggcaa 372
||||||||||||||| || || |||||||||||||||||||
Sbjct: 151 catgtctgctaaagaaaaggggaaatttgaagatatggcaa 191
>X80459 M.musculus HMG1-R-177 gene
Length = 173
Score = 133 bits (67), Expect = 1e-28
Identities = 127/146 (86%), Gaps = 2/146 (1%)
Strand = Plus / Plus
Query: 2 tgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtgc 61
|||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||| |||
Sbjct: 2 tgggcaaaaaagatcctaagaagctgagaggcaaaatgtcctcatatgcattctttttgc 61
Query: 62 aaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagagt 121
|||| | | ||| | |||| ||||||||||||| ||||||| ||||||| |||||||
Sbjct: 62 aaaccttttgggtgtagcacaagaagaagcacctggatgctt--ttcaacttttcagagt 119
Query: 122 tttctaagaagtgctcagagaggtgg 147
| ||||||||||||||||||||||||
Sbjct: 120 tctctaagaagtgctcagagaggtgg 145
>X80467 M.musculus HMG1-R-87 gene
Length = 190
Score = 133 bits (67), Expect = 1e-28
Identities = 127/146 (86%), Gaps = 2/146 (1%)
Strand = Plus / Plus
Query: 2 tgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtgc 61
|||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||| |||
Sbjct: 2 tgggcaaaaaagatcctaagaagctgagaggcaaaatgtcctcatatgcattctttttgc 61
Query: 62 aaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagagt 121
|||| | | ||| | |||| ||||||||||||| ||||||| ||||||| |||||||
Sbjct: 62 aaaccttttgggtgtagcacaagaagaagcacctggatgctt--ttcaacttttcagagt 119
Query: 122 tttctaagaagtgctcagagaggtgg 147
| ||||||||||||||||||||||||
Sbjct: 120 tctctaagaagtgctcagagaggtgg 145
Score = 52.0 bits (26), Expect = 4e-04
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatgg 369
|||||||| |||||||||| || || ||||||||||||||||
Sbjct: 147 agaccatgactgctaaagaaaaggggaaatttgaagatatgg 188
>X80465 M.musculus HMG1-R-168 gene
Length = 181
Score = 133 bits (67), Expect = 1e-28
Identities = 131/151 (86%), Gaps = 1/151 (0%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatc-atatgcattttttgt 59
||||||||||||||||||||||||| |||| |||||||||| | ||||||||| ||| |
Sbjct: 1 atgggcaaaggagatcctaagaagctgagacgcaaaatgtcctgtatatgcattctttat 60
Query: 60 gcaaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcaga 119
|||||| || | ||||||||| |||| ||| ||| |||||||| ||||||||||||||
Sbjct: 61 gcaaacctgccaggaggagcacaagacaaagtacctggatgcttctgtcaacttctcaga 120
Query: 120 gttttctaagaagtgctcagagaggtggaag 150
||| || |||||||| |||||||||||||||
Sbjct: 121 gttctccaagaagtgttcagagaggtggaag 151
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaattt 359
||||||||||||||||||| ||||| ||||||
Sbjct: 150 agaccatgtctgctaaagaaaaagggaaattt 181
>X80463 M.musculus HMG1-R-159 gene
Length = 192
Score = 131 bits (66), Expect = 5e-28
Identities = 127/146 (86%), Gaps = 1/146 (0%)
Strand = Plus / Plus
Query: 2 tgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtgc 61
|||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||| |||
Sbjct: 2 tgggcaaaaaagatcctaagaagctgagaggcaaaatgtcctcatatgcattctttttgc 61
Query: 62 aaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagagt 121
|||| | | ||| | |||| ||||||||||||| |||||||| ||||||| |||||||
Sbjct: 62 aaaccttttgggtgtagcacaagaagaagcacctggatgcttc-ttcaacttttcagagt 120
Query: 122 tttctaagaagtgctcagagaggtgg 147
| |||| |||||||||||||||||||
Sbjct: 121 tctctatgaagtgctcagagaggtgg 146
Score = 52.0 bits (26), Expect = 4e-04
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatgg 369
|||||||| |||||||||| || || ||||||||||||||||
Sbjct: 148 agaccatgactgctaaagaaaaggggaaatttgaagatatgg 189
>L32859 Rainbow trout HMG-1 gene exons 2-5, complete cds.
Length = 3882
Score = 127 bits (64), Expect = 8e-27
Identities = 124/144 (86%)
Strand = Plus / Plus
Query: 12 agatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtgcaaacttgtcg 71
|||||| | ||||||||| ||||| ||||| || ||||| | ||||| || || |||||
Sbjct: 1285 agatccaaggaagccgaggggcaagatgtcctcctatgcctactttgtccagacctgtcg 1344
Query: 72 ggaggagcataagaagaagcacccagatgcttcagtcaacttctcagagttttctaagaa 131
||||||||| |||||||| |||||||| ||||| ||||||||||||||||| || |||||
Sbjct: 1345 ggaggagcacaagaagaaacacccagaagcttccgtcaacttctcagagttctccaagaa 1404
Query: 132 gtgctcagagaggtggaaggtaag 155
|||||| ||||| |||||||||||
Sbjct: 1405 gtgctctgagagatggaaggtaag 1428
Score = 50.1 bits (25), Expect = 0.001
Identities = 97/121 (80%)
Strand = Plus / Plus
Query: 1028 ggcctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgca 1087
|||||||| || |||||||| || ||||| |||||||||| |||||| ||| | ||
Sbjct: 2358 ggcctgtctatcggtgatgtggccaagaagctgggagagaagtggaacaacctaacagcg 2417
Query: 1088 gatgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaaggta 1147
|| |||||| || ||||| ||||||||| | ||||||||||| || ||||| ||||||
Sbjct: 2418 gaggacaaggtaccctatgagaagaaggcttccaagctgaaggagaagtacgagaaggta 2477
Query: 1148 a 1148
|
Sbjct: 2478 a 2478
Score = 46.1 bits (23), Expect = 0.023
Identities = 122/155 (78%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
||||||||||||| || ||||| || || ||||| ||| |||| ||| |||||||| |
Sbjct: 1845 agaccatgtctgccaaggagaaggggaagtttgaggatctggccaaactggacaaggtgc 1904
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
| ||||| || || |||| | ||| || |||||||| || |||| || |||| |||||
Sbjct: 1905 gatatgagagggagatgaggagctacattcctcccaagggagagaagaagaagaggttca 1964
Query: 448 aggatcccaatgcacccaagaggcctccgtgagta 482
|||| ||||| || |||||||| || ||||||||
Sbjct: 1965 aggaccccaacgcccccaagagaccatcgtgagta 1999
Score = 44.1 bits (22), Expect = 0.090
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccc 2377
||||| ||||||||||||||||||||
Sbjct: 3186 cttgtttataaagcatttaacccccc 3211
>X80460 M.musculus HMG1-R-135 gene
Length = 190
Score = 127 bits (64), Expect = 8e-27
Identities = 126/144 (87%), Gaps = 2/144 (1%)
Strand = Plus / Plus
Query: 2 tgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtgc 61
|||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||| |||
Sbjct: 2 tgggcaaaaaagatcctaagaagctgagaggcaaaatgtcctcatatgcattctttttgc 61
Query: 62 aaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagagt 121
|||| | ||| | |||| |||||||||||||| |||||||| ||||||| |||||||
Sbjct: 62 aaaccttctgggtgtagcacaagaagaagcacccggatgcttc-ttcaactt-tcagagt 119
Query: 122 tttctaagaagtgctcagagaggt 145
| ||||||||||||||||||||||
Sbjct: 120 tctctaagaagtgctcagagaggt 143
Score = 52.0 bits (26), Expect = 4e-04
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatgg 369
|||||||| |||||||||| || || ||||||||||||||||
Sbjct: 147 agaccatgactgctaaagaaaaggggaaatttgaagatatgg 188
>X80464 M.musculus HMG1-R-161 gene
Length = 195
Score = 125 bits (63), Expect = 3e-26
Identities = 128/147 (87%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 2 tgggcaaaggagatcctaagaagcc-gagaggcaaaatgtcatcatatgcattttttgtg 60
|||||||| ||||||||||||| | ||||||||||||||| ||||||||||| ||| ||
Sbjct: 2 tgggcaaaaaagatcctaagaaggctgagaggcaaaatgtcctcatatgcattctttttg 61
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
||||| | | ||| | |||| ||||||||||||| |||||||| ||||||| ||||||
Sbjct: 62 caaaccttttgggtgtagcacaagaagaagcacctggatgcttc-ttcaacttttcagag 120
Query: 121 ttttctaagaagtgctcagagaggtgg 147
|| ||||||||||||||||||||||||
Sbjct: 121 ttctctaagaagtgctcagagaggtgg 147
Score = 52.0 bits (26), Expect = 4e-04
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatgg 369
|||||||| |||||||||| || || ||||||||||||||||
Sbjct: 149 agaccatgactgctaaagaaaaggggaaatttgaagatatgg 190
>X02666 Trout mRNA for high mobility group protein HMG-T
Length = 716
Score = 117 bits (59), Expect = 7e-24
Identities = 119/139 (85%)
Strand = Plus / Plus
Query: 12 agatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtgcaaacttgtcg 71
|||||| | ||||||||| ||||| ||||| || ||||| | ||||| || ||| ||||
Sbjct: 9 agatccaaggaagccgaggggcaagatgtcctcctatgcctactttgtccagactcgtcg 68
Query: 72 ggaggagcataagaagaagcacccagatgcttcagtcaacttctcagagttttctaagaa 131
||||||||| |||||||| |||||||| ||||| ||||||||||||||||| || |||||
Sbjct: 69 ggaggagcacaagaagaaacacccagaagcttccgtcaacttctcagagttctccaagaa 128
Query: 132 gtgctcagagaggtggaag 150
|||||| ||||| ||||||
Sbjct: 129 gtgctctgagagatggaag 147
Score = 44.1 bits (22), Expect = 0.090
Identities = 112/142 (78%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
||||||||||||| || ||||| || || ||||| ||| |||| ||| |||||||| |
Sbjct: 146 agaccatgtctgccaaggagaaggggaagtttgaggatctggccaaactggacaaggtgc 205
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
| ||||| || || |||| | ||| || |||||||| || |||| || |||| |||||
Sbjct: 206 gatatgagagggagatgaggagctacattcctcccaagggagagaagaagaagaggttca 265
Query: 448 aggatcccaatgcacccaagag 469
|||| ||||| || ||||||||
Sbjct: 266 aggaccccaacgcccccaagag 287
Score = 44.1 bits (22), Expect = 0.090
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2352 cttgtctataaagcatttaacccccc 2377
||||| ||||||||||||||||||||
Sbjct: 648 cttgtttataaagcatttaacccccc 673
>U21933 Xenopus laevis high mobility group protein-1 (HMG-1) mRNA,
complete
Length = 1552
Score = 107 bits (54), Expect = 7e-21
Identities = 126/150 (84%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||| ||||| |||||||||||||| ||||| |||||||| |||||||| | ||||||
Sbjct: 57 atgggtaaaggtgatcctaagaagccaagaggaaaaatgtcctcatatgcttactttgtg 116
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
||||| || | || ||||| ||||| |||||||| ||||| || || || || |||||
Sbjct: 117 caaacatgcagagaagagcacaagaaaaagcaccctgatgcctctgtaaattttgcagag 176
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
||||||||||| |||||||| |||||||||
Sbjct: 177 ttttctaagaaatgctcagaaaggtggaag 206
Score = 89.7 bits (45), Expect = 2e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 2353 ttgtctataaagcatttaacccccctgtacacaactcactccttt 2397
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ttgtctataaagcatttaacccccctgtacacaactcactccttt 749
Score = 89.7 bits (45), Expect = 2e-15
Identities = 96/113 (84%)
Strand = Plus / Plus
Query: 357 tttgaagatatggcaaaagcggacaaggcccgttatgaaagagaaatgaaaacctatatc 416
|||||||||||||||||||| ||||| | || ||||| || |||||||||| |||||
Sbjct: 231 tttgaagatatggcaaaagccgacaaagttcgctatgagagggaaatgaaaagttatatt 290
Query: 417 cctcccaaaggggagacaaaaaagaagttcaaggatcccaatgcacccaagag 469
|| |||||||| || |||||||||| ||||||||| || |||||||| |||||
Sbjct: 291 ccacccaaaggagaaacaaaaaagaggttcaaggaccctaatgcaccaaagag 343
Score = 87.7 bits (44), Expect = 7e-15
Identities = 82/92 (89%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 1055 aaactgggagagatgtggaataacactgctgcagatgacaagcagccttatgaaaagaag 1114
|||||||||||||||||||||||||||||| |||||||||| | ||| |||| || ||||
Sbjct: 435 aaactgggagagatgtggaataacactgctacagatgacaaactgccctatg-aacgaag 493
Query: 1115 -gctgcgaagctgaaggaaaaatacgaaaagg 1145
||||| ||||||||||| ||||| |||||||
Sbjct: 494 agctgccaagctgaaggagaaatatgaaaagg 525
Score = 73.8 bits (37), Expect = 1e-10
Identities = 94/111 (84%), Gaps = 4/111 (3%)
Strand = Plus / Plus
Query: 2464 gtatagttaacacactaccgaatgtgtctttagatagccctgtc--ctggtggtattttc 2521
|||||||||||||||||||||||||||| ||| ||| |||||| | ||||| || |
Sbjct: 851 gtatagttaacacactaccgaatgtgtc--tagctagtcctgtcttatagtggttttgtt 908
Query: 2522 aatagccactaaccttgcctggtacagtatgggggttgtaaattggcatgg 2572
||| |||||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct: 909 aattgccactaaccttgcctcttacagtaaaggggttgtaaactggcatgg 959
Score = 42.1 bits (21), Expect = 0.36
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 2413 aaatgtaaggctgtgtaagatttgtttttaaactgtacagt 2453
|||| ||| ||||||||||||||| |||| |||||||||||
Sbjct: 763 aaatataatgctgtgtaagatttgatttt-aactgtacagt 802
>I14731 Sequence 10 from patent US 5451670.
Length = 2188
Score = 91.7 bits (46), Expect = 4e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttt 2397
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 cttgtctataaagcatttaacccccctgtacacaactcactccttt 1
>X63463 G.gallus HMG2a mRNA
Length = 1073
Score = 89.7 bits (45), Expect = 2e-15
Identities = 90/105 (85%)
Strand = Plus / Plus
Query: 46 tatgcattttttgtgcaaacttgtcgggaggagcataagaagaagcacccagatgcttca 105
||||| || |||||||| || || || |||||||| ||||||||| ||||||| | | |
Sbjct: 106 tatgccttctttgtgcagacgtgccgtgaggagcacaagaagaagaacccagaggttcct 165
Query: 106 gtcaacttctcagagttttctaagaagtgctcagagaggtggaag 150
|||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 166 gtcaactttgcagagttctctaagaagtgctcagagaggtggaag 210
Score = 40.1 bits (20), Expect = 1.4
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 1094 aagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaagg 1145
|||||||| ||| | || |||||||| ||||||||||| || ||||| ||||
Sbjct: 475 aagcagccctataacaataaggctgctaagctgaaggagaagtacgagaagg 526
>Z29356 Gallus domesticus of h71t7 gene encoding G.domesticus
expressed sequence
Length = 237
Score = 81.8 bits (41), Expect = 4e-13
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||||||||| ||||| |||||||||||||| |||||||| ||||| || || ||||||
Sbjct: 153 atgggcaaaggtgatcccaagaagccgagaggtaaaatgtcttcatacgccttctttgtg 212
Query: 61 caaacttgtcgggaggagcataaga 85
||||| || ||| ||||||| ||||
Sbjct: 213 caaacctgccggcaggagcacaaga 237
>D84418 Rat mRNA for chromosomal protein HMG2, complete cds.
Length = 1072
Score = 77.8 bits (39), Expect = 6e-12
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 974 gccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctggcctg 1033
||||||||||| || |||||||| |||||||||| |||||| | ||||| || ||||||
Sbjct: 375 gccttcttcctgttttgctctgaacatcgcccaaagatcaaaagtgaacaccccggcctg 434
Query: 1034 tccattggtgatgttgcgaagaaactgggagagatgtgg 1072
|| ||||| ||| ||| ||||||||||| |||||||||
Sbjct: 435 tctattggagatactgcaaagaaactgggggagatgtgg 473
Score = 44.1 bits (22), Expect = 0.090
Identities = 118/150 (78%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
|||||||| || || || || |||||| | ||||| ||||| || || || || || |||
Sbjct: 75 atgggcaagggggaccccaacaagccgcggggcaagatgtcctcgtacgccttcttcgtg 134
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
|| || || ||||||||||| ||||||||||| || || | || ||||||||| | |||
Sbjct: 135 cagacctgccgggaggagcacaagaagaagcatcccgactcgtcggtcaacttcgccgag 194
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
|| || ||||| || || ||||| ||||||
Sbjct: 195 ttctcgaagaaatgttcggagagatggaag 224
>Z46757 M.musculus mRNA for high mobility group 2 protein.
Length = 870
Score = 77.8 bits (39), Expect = 6e-12
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 974 gccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctggcctg 1033
||||||||||| || |||||||| |||||||||| |||||| ||||| || ||||||
Sbjct: 397 gccttcttcctgttttgctctgaaaatcgcccaaagatcaaaattgaacacccaggcctg 456
Query: 1034 tccattggtgatgttgcgaagaaactgggagagatgtgg 1072
|| ||||| ||| ||||||||||||||| |||||||||
Sbjct: 457 tctattggagatactgcgaagaaactgggtgagatgtgg 495
Score = 44.1 bits (22), Expect = 0.090
Identities = 118/150 (78%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
|||||||| || || || || |||||| | ||||||||||| || || || || || |||
Sbjct: 97 atgggcaagggtgaccccaacaagccgcggggcaaaatgtcctcgtacgccttcttcgtg 156
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
|| || || || |||||||| ||||||||||| || || | || || |||||| | |||
Sbjct: 157 cagacctgccgcgaggagcacaagaagaagcatcccgactcgtcggtgaacttcgccgag 216
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
|| || ||||| ||||| ||||| ||||||
Sbjct: 217 ttctccaagaaatgctccgagagatggaag 246
>U31513 Ambystoma mexicanum high mobility group protein-2 (HMG-2)
mRNA,
Length = 1048
Score = 75.8 bits (38), Expect = 3e-11
Identities = 122/150 (81%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||| ||||||||||| || ||||| | ||||| ||||| || || || | ||||||
Sbjct: 19 atgggtaaaggagatccgaacaagccccggggcaagatgtcgtcctacgcctactttgtg 78
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
|| || || |||||||||||||||||||||||||| || || || || |||||| | |||
Sbjct: 79 cagacgtgccgggaggagcataagaagaagcacccggacgcctccgtaaacttcgccgag 138
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
|| ||||| |||||||| || ||||||||
Sbjct: 139 ttctctaaaaagtgctccgaacggtggaag 168
Score = 46.1 bits (23), Expect = 0.023
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 447 aaggatcccaatgcacccaagag 469
|||||||||||||||||||||||
Sbjct: 289 aaggatcccaatgcacccaagag 311
>D14314 Chicken mRNA for HMG-1, complete cds.
Length = 740
Score = 69.9 bits (35), Expect = 2e-09
Identities = 88/105 (83%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 46 tatgcattttttgtgcaaacttgtcgggaggagcataagaagaagcacccagatgcttca 105
||||| || |||||||| || || || |||||||| |||||||| |||||| | | |
Sbjct: 66 tatgccttctttgtgcagacgtgccgtgaggagcacaagaagaa---cccagaggttcct 122
Query: 106 gtcaacttctcagagttttctaagaagtgctcagagaggtggaag 150
|||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 123 gtcaactttgcagagttctctaagaagtgctcagagaggtggaag 167
Score = 40.1 bits (20), Expect = 1.4
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 1094 aagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaagg 1145
|||||||| ||| | || |||||||| ||||||||||| || ||||| ||||
Sbjct: 432 aagcagccctataacaataaggctgctaagctgaaggagaagtacgagaagg 483
>Z17240 Homo sapiens for mRNA encoding HMG2B.
Length = 1066
Score = 69.9 bits (35), Expect = 2e-09
Identities = 83/99 (83%)
Strand = Plus / Plus
Query: 974 gccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctggcctg 1033
||||||||||| || |||||||| |||||||||| |||||| | ||||| ||||||||
Sbjct: 232 gccttcttcctgttttgctctgaacatcgcccaaagatcaaaagtgaacaccctggccta 291
Query: 1034 tccattggtgatgttgcgaagaaactgggagagatgtgg 1072
|||||||| ||| ||| |||||| |||| || ||||||
Sbjct: 292 tccattggggatactgcaaagaaattgggtgaaatgtgg 330
Score = 38.2 bits (19), Expect = 5.5
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaa 374
||||||||||||| || ||||| || ||||||||||||||||||
Sbjct: 80 agaccatgtctgcaaaggagaagtcgaagtttgaagatatggcaaaa 126
>M83665 Human high mobility group 2 protein (HMG-2) gene, complete
cds.
Length = 4341
Score = 69.9 bits (35), Expect = 2e-09
Identities = 83/99 (83%)
Strand = Plus / Plus
Query: 974 gccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctggcctg 1033
||||||||||| || |||||||| |||||||||| |||||| | ||||| ||||||||
Sbjct: 2327 gccttcttcctgttttgctctgaacatcgcccaaagatcaaaagtgaacaccctggccta 2386
Query: 1034 tccattggtgatgttgcgaagaaactgggagagatgtgg 1072
|||||||| ||| ||| |||||| |||| || ||||||
Sbjct: 2387 tccattggggatactgcaaagaaattgggtgaaatgtgg 2425
Score = 56.0 bits (28), Expect = 2e-05
Identities = 121/152 (79%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||| |||||||| || || |||||| | ||||||||||| || || || || || |||
Sbjct: 1669 atgggtaaaggagaccccaacaagccgcggggcaaaatgtcctcgtacgccttcttcgtg 1728
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
|| || || ||||| ||||| |||||||| ||||| || |||| ||||| ||| | ||
Sbjct: 1729 cagacctgccgggaagagcacaagaagaaacacccggactcttccgtcaatttcgcggaa 1788
Query: 121 ttttctaagaagtgctcagagaggtggaaggt 152
|| || |||||||| || ||||| ||||||||
Sbjct: 1789 ttctccaagaagtgttcggagagatggaaggt 1820
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2147 aggatattgctgcatatcg 2165
|||||||||||||||||||
Sbjct: 3078 aggatattgctgcatatcg 3096
Score = 38.2 bits (19), Expect = 5.5
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaa 374
||||||||||||| || ||||| || ||||||||||||||||||
Sbjct: 2102 agaccatgtctgcaaaggagaagtcgaagtttgaagatatggcaaaa 2148
>X62534 H.sapiens HMG-2 mRNA
Length = 1301
Score = 69.9 bits (35), Expect = 2e-09
Identities = 83/99 (83%)
Strand = Plus / Plus
Query: 974 gccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctggcctg 1033
||||||||||| || |||||||| |||||||||| |||||| | ||||| ||||||||
Sbjct: 515 gccttcttcctgttttgctctgaacatcgcccaaagatcaaaagtgaacaccctggccta 574
Query: 1034 tccattggtgatgttgcgaagaaactgggagagatgtgg 1072
|||||||| ||| ||| |||||| |||| || ||||||
Sbjct: 575 tccattggggatactgcaaagaaattgggtgaaatgtgg 613
Score = 52.0 bits (26), Expect = 4e-04
Identities = 119/150 (79%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||| |||||||| || || |||||| | ||||||||||| || || || || || |||
Sbjct: 215 atgggtaaaggagaccccaacaagccgcggggcaaaatgtcctcgtacgccttcttcgtg 274
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
|| || || ||||| ||||| |||||||| ||||| || |||| ||||| ||| | ||
Sbjct: 275 cagacctgccgggaagagcacaagaagaaacacccggactcttccgtcaatttcgcggaa 334
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
|| || |||||||| || ||||| ||||||
Sbjct: 335 ttctccaagaagtgttcggagagatggaag 364
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2146 aaggatattgctgcatatcg 2165
||||||||||||||||||||
Sbjct: 683 aaggatattgctgcatatcg 702
Score = 38.2 bits (19), Expect = 5.5
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaa 374
||||||||||||| || ||||| || ||||||||||||||||||
Sbjct: 363 agaccatgtctgcaaaggagaagtcgaagtttgaagatatggcaaaa 409
>X98857 L.fluviatilis mRNA for HMG protein
Length = 1650
Score = 67.9 bits (34), Expect = 6e-09
Identities = 121/150 (80%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
||||| || |||||||| |||||||| | ||||| ||||| ||||| || | || |||
Sbjct: 73 atgggtaagggagatccgaagaagcccaagggcaagatgtcgtcatacgcctacttcgtg 132
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
|| || || || |||||||| ||||||||| ||||||| || || |||||||| | |||
Sbjct: 133 cagacgtgccgcgaggagcacaagaagaagaacccagaggcgtcggtcaactttgccgag 192
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
|| || ||||||||||| ||| ||||||||
Sbjct: 193 ttctccaagaagtgctccgagcggtggaag 222
Score = 40.1 bits (20), Expect = 1.4
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1047 ttgcgaagaaactgggagagatgtggaa 1074
|||| ||||||||||| |||||||||||
Sbjct: 449 ttgccaagaaactgggtgagatgtggaa 476
>X67668 M.musculus mRNA for high mobility group 2 protein
Length = 847
Score = 61.9 bits (31), Expect = 4e-07
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 974 gccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctggcctg 1033
||||||| ||| || |||||||| |||||||||| |||||| ||| | || ||||||
Sbjct: 436 gccttctgcctgttttgctctgaaaatcgcccaaagatcaaaattgaatacccgggcctg 495
Query: 1034 tccattggtgatgttgcgaagaaactgggagagatgtgg 1072
|| ||||| ||| ||||||||||||||| |||||||||
Sbjct: 496 tctattggagatactgcgaagaaactgggtgagatgtgg 534
Score = 60.0 bits (30), Expect = 2e-06
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 31 ggcaaaatgtcatcatatgcattttttgtgcaaacttgtcgggaggagcataagaagaag 90
||||||||||| || || || ||||||||||| || || ||||||||||| |||||||||
Sbjct: 166 ggcaaaatgtcctcttacgccttttttgtgcagacctgccgggaggagcacaagaagaag 225
Query: 91 ca 92
||
Sbjct: 226 ca 227
>J02895 Pig non-histone chromosomal protein (HMG2) mRNA, complete cds.
Length = 1153
Score = 61.9 bits (31), Expect = 4e-07
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 974 gccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctggcctg 1033
||||||||||| || |||||||| |||||||||| |||||| | ||||| |||||| |
Sbjct: 444 gccttcttcctgttttgctctgaacatcgcccaaagatcaaaagtgaacaccctggctta 503
Query: 1034 tccattggtgatgttgcgaagaaactgggagagatgtgg 1072
|||||||| ||| ||| |||||| |||| || ||||||
Sbjct: 504 tccattggggatactgcaaagaaattgggtgaaatgtgg 542
Score = 58.0 bits (29), Expect = 6e-06
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 70 cgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagagttttctaag 129
||||||||||| |||||||| ||||| ||| | || ||||||||| | ||||| || |||
Sbjct: 213 cgggaggagcacaagaagaaacaccccgattcctcggtcaacttcgccgagttctccaag 272
Query: 130 aagtgctcagagaggtggaag 150
|||||||| ||| | ||||||
Sbjct: 273 aagtgctccgagcgatggaag 293
Score = 38.2 bits (19), Expect = 5.5
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 1103 tatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaagg 1145
|||||| |||| || || ||||| ||||||||||| |||||||
Sbjct: 573 tatgaacagaaagcagctaagctaaaggaaaaatatgaaaagg 615
>D30765 Xenopus laevis mRNA for HMG-X protein, complete cds.
Length = 1081
Score = 60.0 bits (30), Expect = 2e-06
Identities = 120/150 (80%)
Strand = Plus / Plus
Query: 1 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
|||||||| ||||||||||| ||||| | || || ||||| || || || | ||| |||
Sbjct: 105 atgggcaagggagatcctaacaagcctcgggggaagatgtcctcctacgcctatttcgtg 164
Query: 61 caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
|| || || |||||||||| |||||||||||||| || | || ||||||||||| ||
Sbjct: 165 cagacctgcagggaggagcacaagaagaagcacccggacacctccgtcaacttctccgac 224
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
|| || ||||| ||||| ||||| ||||||
Sbjct: 225 ttctccaagaaatgctccgagagatggaag 254
Score = 38.2 bits (19), Expect = 5.5
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 402 atgaaaacctatatccctcccaaaggggagacaaa 436
||||| ||||||||||| || ||||| ||||||||
Sbjct: 327 atgaagacctatatcccaccaaaaggagagacaaa 361
>L32954 Rainbow trout HMG-T2 gene exons 1-4, complete cds.
Length = 1368
Score = 54.0 bits (27), Expect = 9e-05
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 101 cttcagtcaacttctcagagttttctaagaagtgctcagagaggtggaaggtaag 155
||||||| ||||| || ||||| || ||||| |||||||||||||||| ||||||
Sbjct: 130 cttcagtgaacttttccgagttctcaaagaaatgctcagagaggtggagggtaag 184
>M83235 Gallus gallus non-histone chromosomal protein (HMG2) mRNA,
complete
Length = 1083
Score = 52.0 bits (26), Expect = 4e-04
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 73 gaggagcataagaagaagcacccagatgcttcagtcaacttctcagagttttctaagaag 132
|||||||| |||||||||||||| || | |||||||||||| | ||||| || ||||
Sbjct: 155 gaggagcacaagaagaagcacccggactcgtcagtcaacttcgccgagttctcgcggaag 214
Query: 133 tgctcagagaggtggaag 150
||||| ||| ||||||||
Sbjct: 215 tgctcggagcggtggaag 232
>AF003626 Homo sapiens cosmids IM0525, LC1233, Qc3C1, LB1439, Qc12C11
and
Length = 86769
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 121 ttttctaagaagtgctcagagaggtggaaggta 153
||||| ||||||||||| |||||||||||||||
Sbjct: 66881 ttttccaagaagtgctctgagaggtggaaggta 66913
>M80574 Gallus domesticus high-mobility group-2 protein (HMG-2)
mRNA,
Length = 995
Score = 46.1 bits (23), Expect = 0.023
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 76 gagcataagaagaagcacccagatgcttcagtcaacttctcagagttttctaagaagtgc 135
||||| |||||||||||||| || | |||||||||||| | ||||| || |||||||
Sbjct: 175 gagcacaagaagaagcacccggactcgtcagtcaacttcgccgagttctcgcggaagtgc 234
Query: 136 tcagagaggtggaag 150
|| ||| ||||||||
Sbjct: 235 tcggagcggtggaag 249
>X80869 P.citri gene for cytochrome oxidase subunit I
Length = 366
Score = 46.1 bits (23), Expect = 0.023
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1627 tatagttcagtaaattgaaatattaaa 1653
||||| |||||||||||||||||||||
Sbjct: 276 tatagatcagtaaattgaaatattaaa 250
>AF022465 Mus musculus high mobility group protein homolog HMG4 (Hmg4)
mRNA,
Length = 1502
Score = 44.1 bits (22), Expect = 0.090
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 1025 cctggcctgtccattggtgatgttgcgaagaaactgggagagatgtggaataac 1078
|||||| | |||||||| ||||| || || || ||||| |||||||||||||||
Sbjct: 373 cctggcatctccattggagatgtggcaaaaaagctgggtgagatgtggaataac 426
Score = 42.1 bits (21), Expect = 0.36
Identities = 84/105 (80%)
Strand = Plus / Plus
Query: 46 tatgcattttttgtgcaaacttgtcgggaggagcataagaagaagcacccagatgcttca 105
||||| || |||||||| || || |||| || ||||||||||| ||||||| | | |
Sbjct: 73 tatgccttctttgtgcagacatgcagggaagaacataagaagaaaaacccagaggttccc 132
Query: 106 gtcaacttctcagagttttctaagaagtgctcagagaggtggaag 150
||||| || | ||||| || ||||||||||| ||||||||||||
Sbjct: 133 gtcaattttgctgagttctccaagaagtgctcggagaggtggaag 177
>AC002510 Arabidopsis thaliana chromosome II BAC T32G6 genomic sequence,
Length = 91979
Score = 44.1 bits (22), Expect = 0.090
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 299 aacttaaacttacaaattaattattt 324
||||||||||||||| ||||||||||
Sbjct: 75922 aacttaaacttacaagttaattattt 75947
>AB009838 Loligo bleekeri mitochondrial DNA, complete sequence.
Length = 8148
Score = 44.1 bits (22), Expect = 0.090
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 610 ttatatttaaatagtataaaat 631
||||||||||||||||||||||
Sbjct: 6884 ttatatttaaatagtataaaat 6863
>Y10043 Homo sapiens mRNA for high mobility group protein HMG2a
Length = 1633
Score = 44.1 bits (22), Expect = 0.090
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
||||| ||||||||||| ||||||||||||
Sbjct: 207 ttttccaagaagtgctctgagaggtggaag 236
>AC004008 Human PAC clone DJ0899B21 from 7p15-p21, complete sequence.
Length = 90389
Score = 42.1 bits (21), Expect = 0.36
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 703 tttgatctttttatttcttgaaaaa 727
|||||| ||||||||||||||||||
Sbjct: 74760 tttgatttttttatttcttgaaaaa 74784
>AE001182;AE000783 Borrelia burgdorferi (section 68 of 70) of the
complete genome.
Length = 11228
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1861 ggttttaatagagttaggat 1880
||||||||||||||||||||
Sbjct: 2644 ggttttaatagagttaggat 2663
>AE000963;AE000782 Archaeoglobus fulgidus section 144 of 172 of the
complete genome.
Length = 22014
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 129 gaagtgctcagagaggtgga 148
||||||||||||||||||||
Sbjct: 4060 gaagtgctcagagaggtgga 4079
>U60491 Nicotiana tabacum actin (Tob66) gene, partial cds.
Length = 1677
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 346 agaaaggaaaatttgaagat 365
||||||||||||||||||||
Sbjct: 934 agaaaggaaaatttgaagat 915
>AB001684 Chlorella vulgaris C-27 chloroplast DNA, complete sequence.
Length = 150613
Score = 40.1 bits (20), Expect = 1.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 700 ccttttgatctttttatttcttgaaaaa 727
||||||||||||||| ||| ||||||||
Sbjct: 142202 ccttttgatcttttttttttttgaaaaa 142175
>Z50742 Caenorhabditis elegans cosmid K09A11
Length = 20856
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1422 aaaaatgagcattttcaaat 1441
||||||||||||||||||||
Sbjct: 3011 aaaaatgagcattttcaaat 2992
>X64643 H.sapiens c6.1A mRNA
Length = 2407
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 396 agagaaatgaaaacctatat 415
||||||||||||||||||||
Sbjct: 2198 agagaaatgaaaacctatat 2217
>Z83838 Human DNA sequence from PAC 127B20 on chromosome 22q11.2-qter,
Length = 135258
Score = 40.1 bits (20), Expect = 1.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 395 aagagaaatgaaaacctatatccc 418
||||||||||||||||| ||||||
Sbjct: 123039 aagagaaatgaaaacctgtatccc 123062
>L77118 Methanococcus jannaschii large extra-chromosomal element,
complete
Length = 58407
Score = 38.2 bits (19), Expect = 5.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1513 aacatttatgttcttttccttta 1535
|||||||||||| ||||||||||
Sbjct: 5014 aacatttatgttgttttccttta 5036
>L08814 Rat CIIDBP (homologous to human SSRP-1 and mouse T160 genes)
mRNA,
Length = 2082
Score = 38.2 bits (19), Expect = 5.5
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 447 aaggatcccaatgcacccaagaggcct 473
|||||||| ||||| ||||||||||||
Sbjct: 1180 aaggatccaaatgcccccaagaggcct 1206
>M18222;J03590 Mouse CD3-delta (T3-delta) gene, 5' end; and
CD3-gamma (T3-gamma)
Length = 1726
Score = 38.2 bits (19), Expect = 5.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 857 caatgcatcacagaaattcacag 879
|||||||| ||||||||||||||
Sbjct: 990 caatgcataacagaaattcacag 968
>X95600 M.musculus mRNA for cadherin-8
Length = 2812
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1384 cttgaagttcatgaaaatg 1402
|||||||||||||||||||
Sbjct: 1422 cttgaagttcatgaaaatg 1440
>AB010437 Rattus rattus rCdh8-a1 mRNA for cadherin-8, complete cds.
Length = 3015
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1384 cttgaagttcatgaaaatg 1402
|||||||||||||||||||
Sbjct: 1725 cttgaagttcatgaaaatg 1743
>AB010436 Rattus rattus rCdh8 mRNA for cadherin-8, complete cds.
Length = 3126
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1384 cttgaagttcatgaaaatg 1402
|||||||||||||||||||
Sbjct: 1725 cttgaagttcatgaaaatg 1743
>AL021633 Arabidopsis thaliana DNA chromosome 4, BAC clone F8F16 (ESSAII
project)
Length = 93037
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1659 aattttcagctttagtcat 1677
|||||||||||||||||||
Sbjct: 29677 aattttcagctttagtcat 29659
>I55098 Sequence 53 from patent US 5646250.
Length = 2550
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1384 cttgaagttcatgaaaatg 1402
|||||||||||||||||||
Sbjct: 1177 cttgaagttcatgaaaatg 1195
>I55093 Sequence 43 from patent US 5646250.
Length = 3043
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1384 cttgaagttcatgaaaatg 1402
|||||||||||||||||||
Sbjct: 1733 cttgaagttcatgaaaatg 1751
>I55092 Sequence 41 from patent US 5646250.
Length = 3136
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1384 cttgaagttcatgaaaatg 1402
|||||||||||||||||||
Sbjct: 1733 cttgaagttcatgaaaatg 1751
>I46829 Sequence 47 from patent US 5639634.
Length = 2550
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1384 cttgaagttcatgaaaatg 1402
|||||||||||||||||||
Sbjct: 1177 cttgaagttcatgaaaatg 1195
>I34431 Sequence 53 from patent US 5597725.
Length = 2550
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1384 cttgaagttcatgaaaatg 1402
|||||||||||||||||||
Sbjct: 1177 cttgaagttcatgaaaatg 1195
>I34426 Sequence 43 from patent US 5597725.
Length = 3043
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1384 cttgaagttcatgaaaatg 1402
|||||||||||||||||||
Sbjct: 1733 cttgaagttcatgaaaatg 1751
>I34425 Sequence 41 from patent US 5597725.
Length = 3136
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1384 cttgaagttcatgaaaatg 1402
|||||||||||||||||||
Sbjct: 1733 cttgaagttcatgaaaatg 1751
>Z47547 C.crispus complete mitochondrial genome.
Length = 25836
Score = 38.2 bits (19), Expect = 5.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 707 atctttttatttcttgaaaaata 729
|||||||||||| ||||||||||
Sbjct: 4779 atctttttattttttgaaaaata 4801
>Z46224 C.crispus Mitochondrion gene for large subunit ribosomal RNA
Length = 2583
Score = 38.2 bits (19), Expect = 5.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 707 atctttttatttcttgaaaaata 729
|||||||||||| ||||||||||
Sbjct: 1091 atctttttattttttgaaaaata 1113
>U84139 Bos taurus structure-specific recognition protein 1 (SSRP1)
mRNA,
Length = 1834
Score = 38.2 bits (19), Expect = 5.5
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 446 caaggatcccaatgcacccaagaggcc 472
|||||| |||||||| |||||||||||
Sbjct: 876 caaggaccccaatgcccccaagaggcc 902
>AL010134 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from
contig
Length = 57824
Score = 38.2 bits (19), Expect = 5.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1512 aaacatttatgttcttttccttt 1534
|||||||| ||||||||||||||
Sbjct: 41809 aaacatttctgttcttttccttt 41787
>Z99281 Caenorhabditis elegans cosmid Y57G11C
Length = 313573
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 279 ataatttacttaaatgtta 297
|||||||||||||||||||
Sbjct: 64328 ataatttacttaaatgtta 64310
>Z35597 Caenorhabditis elegans cosmid C36E8
Length = 31808
Score = 38.2 bits (19), Expect = 5.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1423 aaaatgagcattttcaaatggct 1445
|||||||||||||| ||||||||
Sbjct: 15395 aaaatgagcattttgaaatggct 15373
>AF003386 Caenorhabditis elegans cosmid F59E12.
Length = 42430
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 308 ttacaaattaattattttg 326
|||||||||||||||||||
Sbjct: 30744 ttacaaattaattattttg 30762
>Z30950 C.crispus mitochondrial gene for small subunit ribosomal RNA,
NADH-
Length = 3235
Score = 38.2 bits (19), Expect = 5.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 707 atctttttatttcttgaaaaata 729
|||||||||||| ||||||||||
Sbjct: 2864 atctttttattttttgaaaaata 2886
>AF026208 Caenorhabditis elegans cosmid F52D1.
Length = 29138
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 711 ttttatttcttgaaaaata 729
|||||||||||||||||||
Sbjct: 17793 ttttatttcttgaaaaata 17775
>Z69712 Human DNA sequence from cosmid N12G10, on chromosome
22q11.2-qter.
Length = 45353
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 614 atttaaatagtataaaatt 632
|||||||||||||||||||
Sbjct: 44395 atttaaatagtataaaatt 44413
>Z84495 Human DNA sequence from cosmid LUCA8
Length = 28031
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 975 ccttcttcctcttctgctc 993
|||||||||||||||||||
Sbjct: 2973 ccttcttcctcttctgctc 2955
>L81635 Homo sapiens (subclone 2_c11 from P1 H33) DNA sequence,
complete
Length = 4078
Score = 38.2 bits (19), Expect = 5.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 395 aagagaaatgaaaacctatatcc 417
||||||||||||||| |||||||
Sbjct: 1988 aagagaaatgaaaacatatatcc 2010
>Z68754 Human DNA sequence from cosmid cE78H10, on chromosome
22q11.2-qter.
Length = 24888
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 614 atttaaatagtataaaatt 632
|||||||||||||||||||
Sbjct: 19682 atttaaatagtataaaatt 19700
>L34060 Homo sapiens cadherin-8 mRNA, complete cds.
Length = 2545
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1384 cttgaagttcatgaaaatg 1402
|||||||||||||||||||
Sbjct: 1177 cttgaagttcatgaaaatg 1195
>AC002378 Human PAC clone DJ438O4 from 22q12.1-qter, complete
sequence.
Length = 77516
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1422 aaaaatgagcattttcaaa 1440
|||||||||||||||||||
Sbjct: 1772 aaaaatgagcattttcaaa 1754
>AC002124 Human BAC clone RG180O01 from 7p15-p21, complete sequence.
Length = 100923
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 302 ttaaacttacaaattaatt 320
|||||||||||||||||||
Sbjct: 91664 ttaaacttacaaattaatt 91682
>Z93931 Human DNA sequence from PAC 438G17 on chromosome 6q22. Contains
Length = 148198
Score = 38.2 bits (19), Expect = 5.5
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 116 cagagttttctaagaagtgctcagagaggtggaag 150
|||| ||||| ||||| ||||| ||||||||||||
Sbjct: 95695 cagaattttccaagaattgctctgagaggtggaag 95661
>AL008907 H.sapiens STS from genomic clone 404F18.
Length = 348
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1097 cagccttatgaaaagaagg 1115
|||||||||||||||||||
Sbjct: 95 cagccttatgaaaagaagg 77
>AC004130 Homo sapiens BAC clone RG293F17 from 7p15-p21, complete
sequence.
Length = 116215
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 2128 atcctccctttgctttgga 2146
|||||||||||||||||||
Sbjct: 10116 atcctccctttgctttgga 10098
>AC004000 Human PAC clone DJ404F18 from Xq23, complete sequence.
Length = 128117
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1097 cagccttatgaaaagaagg 1115
|||||||||||||||||||
Sbjct: 128007 cagccttatgaaaagaagg 128025
>AC003683 Homo sapiens Xp22 PAC RPCI1-147H15 (Research Park PAC library)
Length = 127683
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 357 tttgaagatatggcaaaag 375
|||||||||||||||||||
Sbjct: 118606 tttgaagatatggcaaaag 118588
>AC003013 Human PAC clone DJ0205E24 from Xq23, complete sequence.
Length = 173452
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 395 aagagaaatgaaaacctat 413
|||||||||||||||||||
Sbjct: 88016 aagagaaatgaaaacctat 87998
>AC002556 Human Chromosome 11 pac pDJ9j14, complete sequence.
Length = 123234
Score = 38.2 bits (19), Expect = 5.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 395 aagagaaatgaaaacctat 413
|||||||||||||||||||
Sbjct: 21414 aagagaaatgaaaacctat 21432
Database: embl.fas
Posted date: May 15, 1998 5:37 PM
Number of letters in database: 675,252,082
Number of sequences in database: 442,729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1123218
Number of Sequences: 442729
Number of extensions: 1123218
Number of successful extensions: 86816
Number of sequences better than 10.0: 106
length of query: 2575
length of database: 675,252,082
effective HSP length: 21
effective length of query: 2554
effective length of database: 665,954,773
effective search space: 1700848490242
effective search space used: 1700848490242
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
