AXT alignment format

Description

Here is the AXT alignment format definition.

LAV alignment format can be converted to AXT with the lavToAxt program.

Example

 0 chr19 3001012 3001075 chr11 70568380 70568443 - 3500
 TCAGCTCATAAATCACCTCCTGCCACAAGCCTGGCCTGGTCCCAGGAGAGTGTCCAGGCTCAGA
 TCTGTTCATAAACCACCTGCCATGACAAGCCTGGCCTGTTCCCAAGACAATGTCCAGGCTCAGA

 1 chr19 3008279 3008357 chr11 70573976 70574054 - 3900
 CACAATCTTCACATTGAGATCCTGAGTTGCTGATCAGAATGGAAGGCTGAGCTAAGATGAGCGACGAGGCAATGTCACA
 CACAGTCTTCACATTGAGGTACCAAGTTGTGGATCAGAATGGAAAGCTAGGCTATGATGAGGGACAGTGCGCTGTCACA