[Bioperl-guts-l] [Bug 2577] Bio::Assembly and Bio::Assembly::IO can exceed the set open file ulimit

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2577





------- Comment #1 from cjfields at bioperl.org  2008-08-29 10:41 EST -------
The workaround is to increase the 'ulimit -n', which may not be possible due to
system limits or lack of admin privileges.  

The most general solution would be to pass the same SF::Collection to each
Contig and store all SFs (using the seq_id to disambiguate the diffferent
contigs).  I'll look into that.


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