AUTHORS
BUGS
Bio/Align/AlignI.pm
Bio/AlignIO.pm
Bio/AlignIO/bl2seq.pm
Bio/AlignIO/clustalw.pm
Bio/AlignIO/emboss.pm
Bio/AlignIO/fasta.pm
Bio/AlignIO/mase.pm
Bio/AlignIO/mega.pm
Bio/AlignIO/meme.pm
Bio/AlignIO/msf.pm
Bio/AlignIO/nexus.pm
Bio/AlignIO/pfam.pm
Bio/AlignIO/phylip.pm
Bio/AlignIO/prodom.pm
Bio/AlignIO/psi.pm
Bio/AlignIO/selex.pm
Bio/AlignIO/stockholm.pm
Bio/AnalysisParserI.pm
Bio/AnalysisResultI.pm
Bio/Annotation.pm
Bio/Annotation/Collection.pm
Bio/Annotation/Comment.pm
Bio/Annotation/DBLink.pm
Bio/Annotation/Reference.pm
Bio/Annotation/SimpleValue.pm
Bio/Annotation/TypeManager.pm
Bio/AnnotationCollectionI.pm
Bio/AnnotationI.pm
Bio/Biblio.pm
Bio/Biblio/Article.pm
Bio/Biblio/BiblioBase.pm
Bio/Biblio/Book.pm
Bio/Biblio/BookArticle.pm
Bio/Biblio/IO.pm
Bio/Biblio/IO/medline2ref.pm
Bio/Biblio/IO/medlinexml.pm
Bio/Biblio/IO/pubmed2ref.pm
Bio/Biblio/IO/pubmedxml.pm
Bio/Biblio/Journal.pm
Bio/Biblio/JournalArticle.pm
Bio/Biblio/MedlineArticle.pm
Bio/Biblio/MedlineBook.pm
Bio/Biblio/MedlineBookArticle.pm
Bio/Biblio/MedlineJournal.pm
Bio/Biblio/MedlineJournalArticle.pm
Bio/Biblio/Organisation.pm
Bio/Biblio/Patent.pm
Bio/Biblio/Person.pm
Bio/Biblio/Proceeding.pm
Bio/Biblio/Provider.pm
Bio/Biblio/PubmedArticle.pm
Bio/Biblio/PubmedBookArticle.pm
Bio/Biblio/PubmedJournalArticle.pm
Bio/Biblio/Ref.pm
Bio/Biblio/Service.pm
Bio/Biblio/TechReport.pm
Bio/Biblio/Thesis.pm
Bio/Biblio/WebResource.pm
Bio/DB/Ace.pm
Bio/DB/Biblio/biofetch.pm
Bio/DB/Biblio/soap.pm
Bio/DB/BiblioI.pm
Bio/DB/BioFetch.pm
Bio/DB/DBFetch.pm
Bio/DB/EMBL.pm
Bio/DB/Failover.pm
Bio/DB/Fasta.pm
Bio/DB/FileCache.pm
Bio/DB/Flat.pm
Bio/DB/Flat/BDB.pm
Bio/DB/Flat/BDB/embl.pm
Bio/DB/Flat/BDB/fasta.pm
Bio/DB/Flat/OBDAIndex.pm
Bio/DB/GDB.pm
Bio/DB/GFF.pm
Bio/DB/GFF/Adaptor/biofetch.pm
Bio/DB/GFF/Adaptor/dbi.pm
Bio/DB/GFF/Adaptor/dbi/caching_handle.pm
Bio/DB/GFF/Adaptor/dbi/iterator.pm
Bio/DB/GFF/Adaptor/dbi/mysql.pm
Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm
Bio/DB/GFF/Adaptor/memory.pm
Bio/DB/GFF/Adaptor/memory_iterator.pm
Bio/DB/GFF/Aggregator.pm
Bio/DB/GFF/Aggregator/alignment.pm
Bio/DB/GFF/Aggregator/clone.pm
Bio/DB/GFF/Aggregator/none.pm
Bio/DB/GFF/Aggregator/transcript.pm
Bio/DB/GFF/Featname.pm
Bio/DB/GFF/Feature.pm
Bio/DB/GFF/Homol.pm
Bio/DB/GFF/RelSegment.pm
Bio/DB/GFF/Segment.pm
Bio/DB/GFF/Typename.pm
Bio/DB/GFF/Util/Binning.pm
Bio/DB/GFF/Util/Rearrange.pm
Bio/DB/GenBank.pm
Bio/DB/GenPept.pm
Bio/DB/InMemoryCache.pm
Bio/DB/MANIFEST
Bio/DB/NCBIHelper.pm
Bio/DB/RandomAccessI.pm
Bio/DB/RefSeq.pm
Bio/DB/Registry.pm
Bio/DB/SeqI.pm
Bio/DB/SwissProt.pm
Bio/DB/Universal.pm
Bio/DB/UpdateableSeqI.pm
Bio/DB/WebDBSeqI.pm
Bio/DB/XEMBL.pm
Bio/DB/XEMBLService.pm
Bio/DBLinkContainerI.pm
Bio/DasI.pm
Bio/DasSegmentI.pm
Bio/Event/EventGeneratorI.pm
Bio/Event/EventHandlerI.pm
Bio/Factory/ApplicationFactoryI.pm
Bio/Factory/BlastHitFactory.pm
Bio/Factory/BlastResultFactory.pm
Bio/Factory/DriverFactory.pm
Bio/Factory/EMBOSS.pm
Bio/Factory/HitFactoryI.pm
Bio/Factory/MapFactoryI.pm
Bio/Factory/ResultFactoryI.pm
Bio/Factory/SeqAnalysisParserFactory.pm
Bio/Factory/SeqAnalysisParserFactoryI.pm
Bio/Factory/TreeFactoryI.pm
Bio/Graphics.pm
Bio/Graphics/Feature.pm
Bio/Graphics/FeatureFile.pm
Bio/Graphics/Glyph.pm
Bio/Graphics/Glyph/Factory.pm
Bio/Graphics/Glyph/alignment.pm
Bio/Graphics/Glyph/anchored_arrow.pm
Bio/Graphics/Glyph/arrow.pm
Bio/Graphics/Glyph/box.pm
Bio/Graphics/Glyph/cds.pm
Bio/Graphics/Glyph/crossbox.pm
Bio/Graphics/Glyph/diamond.pm
Bio/Graphics/Glyph/dna.pm
Bio/Graphics/Glyph/dot.pm
Bio/Graphics/Glyph/ellipse.pm
Bio/Graphics/Glyph/ex.pm
Bio/Graphics/Glyph/extending_arrow.pm
Bio/Graphics/Glyph/generic.pm
Bio/Graphics/Glyph/graded_segments.pm
Bio/Graphics/Glyph/group.pm
Bio/Graphics/Glyph/heterogeneous_segments.pm
Bio/Graphics/Glyph/line.pm
Bio/Graphics/Glyph/oval.pm
Bio/Graphics/Glyph/pinsertion.pm
Bio/Graphics/Glyph/primers.pm
Bio/Graphics/Glyph/rndrect.pm
Bio/Graphics/Glyph/ruler_arrow.pm
Bio/Graphics/Glyph/segmented_keyglyph.pm
Bio/Graphics/Glyph/segments.pm
Bio/Graphics/Glyph/span.pm
Bio/Graphics/Glyph/toomany.pm
Bio/Graphics/Glyph/track.pm
Bio/Graphics/Glyph/transcript.pm
Bio/Graphics/Glyph/transcript2.pm
Bio/Graphics/Glyph/translation.pm
Bio/Graphics/Glyph/triangle.pm
Bio/Graphics/Panel.pm
Bio/Graphics/Util.pm
Bio/Index/Abstract.pm
Bio/Index/AbstractSeq.pm
Bio/Index/Blast.pm
Bio/Index/EMBL.pm
Bio/Index/Fasta.pm
Bio/Index/Fastq.pm
Bio/Index/GenBank.pm
Bio/Index/SwissPfam.pm
Bio/Index/Swissprot.pm
Bio/LiveSeq/AARange.pm
Bio/LiveSeq/Chain.pm
Bio/LiveSeq/ChainI.pm
Bio/LiveSeq/DNA.pm
Bio/LiveSeq/Exon.pm
Bio/LiveSeq/Gene.pm
Bio/LiveSeq/IO/BioPerl.pm
Bio/LiveSeq/IO/Loader.pm
Bio/LiveSeq/IO/README
Bio/LiveSeq/IO/SRS.pm
Bio/LiveSeq/Intron.pm
Bio/LiveSeq/Mutation.pm
Bio/LiveSeq/Mutator.pm
Bio/LiveSeq/Prim_Transcript.pm
Bio/LiveSeq/Range.pm
Bio/LiveSeq/Repeat_Region.pm
Bio/LiveSeq/Repeat_Unit.pm
Bio/LiveSeq/SeqI.pm
Bio/LiveSeq/Transcript.pm
Bio/LiveSeq/Translation.pm
Bio/LocatableSeq.pm
Bio/Location/AvWithinCoordPolicy.pm
Bio/Location/CoordinatePolicyI.pm
Bio/Location/Fuzzy.pm
Bio/Location/FuzzyLocationI.pm
Bio/Location/NarrowestCoordPolicy.pm
Bio/Location/Simple.pm
Bio/Location/Split.pm
Bio/Location/SplitLocationI.pm
Bio/Location/WidestCoordPolicy.pm
Bio/LocationI.pm
Bio/Map/CytoMap.pm
Bio/Map/CytoMarker.pm
Bio/Map/CytoPosition.pm
Bio/Map/LinkageMap.pm
Bio/Map/LinkagePosition.pm
Bio/Map/MapI.pm
Bio/Map/MappableI.pm
Bio/Map/Marker.pm
Bio/Map/MarkerI.pm
Bio/Map/Microsatellite.pm
Bio/Map/OrderedPosition.pm
Bio/Map/OrderedPositionWithDistance.pm
Bio/Map/Position.pm
Bio/Map/PositionI.pm
Bio/Map/SimpleMap.pm
Bio/MapIO.pm
Bio/MapIO/mapmaker.pm
Bio/Perl.pm
Bio/PrimarySeq.pm
Bio/PrimarySeqI.pm
Bio/Range.pm
Bio/RangeI.pm
Bio/Root/Err.pm
Bio/Root/Exception.pm
Bio/Root/Global.pm
Bio/Root/HTTPget.pm
Bio/Root/IO.pm
Bio/Root/IOManager.pm
Bio/Root/Object.pm
Bio/Root/Root.pm
Bio/Root/RootI.pm
Bio/Root/Utilities.pm
Bio/Root/Vector.pm
Bio/Root/Xref.pm
Bio/Search/BlastUtils.pm
Bio/Search/DatabaseI.pm
Bio/Search/GenericDatabase.pm
Bio/Search/HSP/BlastHSP.pm
Bio/Search/HSP/GenericHSP.pm
Bio/Search/HSP/HSPI.pm
Bio/Search/Hit/BlastHit.pm
Bio/Search/Hit/Fasta.pm
Bio/Search/Hit/GenericHit.pm
Bio/Search/Hit/HitI.pm
Bio/Search/Result/BlastResult.pm
Bio/Search/Result/GenericResult.pm
Bio/Search/Result/ResultI.pm
Bio/SearchDist.pm
Bio/SearchIO.pm
Bio/SearchIO/EventHandlerI.pm
Bio/SearchIO/SearchResultEventBuilder.pm
Bio/SearchIO/SearchWriterI.pm
Bio/SearchIO/Writer/HSPTableWriter.pm
Bio/SearchIO/Writer/HTMLResultWriter.pm
Bio/SearchIO/Writer/HitTableWriter.pm
Bio/SearchIO/Writer/ResultTableWriter.pm
Bio/SearchIO/blast.pm
Bio/SearchIO/blastxml.pm
Bio/SearchIO/fasta.pm
Bio/SearchIO/psiblast.pm
Bio/Seq.pm
Bio/Seq/LargePrimarySeq.pm
Bio/Seq/LargeSeq.pm
Bio/Seq/PrimaryQual.pm
Bio/Seq/QualI.pm
Bio/Seq/RichSeq.pm
Bio/Seq/RichSeqI.pm
Bio/Seq/SeqWithQuality.pm
Bio/SeqAnalysisParserI.pm
Bio/SeqFeature/Computation.pm
Bio/SeqFeature/FeaturePair.pm
Bio/SeqFeature/Gene/Exon.pm
Bio/SeqFeature/Gene/ExonI.pm
Bio/SeqFeature/Gene/GeneStructure.pm
Bio/SeqFeature/Gene/GeneStructureI.pm
Bio/SeqFeature/Gene/Intron.pm
Bio/SeqFeature/Gene/NC_Feature.pm
Bio/SeqFeature/Gene/Poly_A_site.pm
Bio/SeqFeature/Gene/Promoter.pm
Bio/SeqFeature/Gene/Transcript.pm
Bio/SeqFeature/Gene/TranscriptI.pm
Bio/SeqFeature/Gene/UTR.pm
Bio/SeqFeature/Generic.pm
Bio/SeqFeature/PositionProxy.pm
Bio/SeqFeature/Similarity.pm
Bio/SeqFeature/SimilarityPair.pm
Bio/SeqFeatureI.pm
Bio/SeqI.pm
Bio/SeqIO.pm
Bio/SeqIO/FTHelper.pm
Bio/SeqIO/MultiFile.pm
Bio/SeqIO/ace.pm
Bio/SeqIO/bsml.pm
Bio/SeqIO/embl.pm
Bio/SeqIO/fasta.pm
Bio/SeqIO/fastq.pm
Bio/SeqIO/game.pm
Bio/SeqIO/game/featureHandler.pm
Bio/SeqIO/game/idHandler.pm
Bio/SeqIO/game/seqHandler.pm
Bio/SeqIO/gcg.pm
Bio/SeqIO/genbank.pm
Bio/SeqIO/largefasta.pm
Bio/SeqIO/phd.pm
Bio/SeqIO/pir.pm
Bio/SeqIO/qual.pm
Bio/SeqIO/raw.pm
Bio/SeqIO/scf.pm
Bio/SeqIO/swiss.pm
Bio/SeqUtils.pm
Bio/SimpleAlign.pm
Bio/Species.pm
Bio/Structure/Atom.pm
Bio/Structure/Chain.pm
Bio/Structure/Entry.pm
Bio/Structure/IO.pm
Bio/Structure/IO/pdb.pm
Bio/Structure/Model.pm
Bio/Structure/Residue.pm
Bio/Structure/SecStr/DSSP/Res.pm
Bio/Structure/SecStr/STRIDE/Res.pm
Bio/Structure/StructureI.pm
Bio/Symbol/Alphabet.pm
Bio/Symbol/AlphabetI.pm
Bio/Symbol/DNAAlphabet.pm
Bio/Symbol/ProteinAlphabet.pm
Bio/Symbol/Symbol.pm
Bio/Symbol/SymbolI.pm
Bio/Tools/AlignFactory.pm
Bio/Tools/Alignment/Consed.pm
Bio/Tools/Alignment/Trim.pm
Bio/Tools/AnalysisResult.pm
Bio/Tools/BPbl2seq.pm
Bio/Tools/BPlite.pm
Bio/Tools/BPlite/HSP.pm
Bio/Tools/BPlite/Iteration.pm
Bio/Tools/BPlite/Sbjct.pm
Bio/Tools/BPpsilite.pm
Bio/Tools/Blast.pm
Bio/Tools/Blast/CHANGES
Bio/Tools/Blast/HSP.pm
Bio/Tools/Blast/HTML.pm
Bio/Tools/Blast/README
Bio/Tools/Blast/Sbjct.pm
Bio/Tools/CodonTable.pm
Bio/Tools/EPCR.pm
Bio/Tools/ESTScan.pm
Bio/Tools/GFF.pm
Bio/Tools/Gel.pm
Bio/Tools/Genemark.pm
Bio/Tools/Genscan.pm
Bio/Tools/Grail.pm
Bio/Tools/HMMER/Domain.pm
Bio/Tools/HMMER/Results.pm
Bio/Tools/HMMER/Set.pm
Bio/Tools/IUPAC.pm
Bio/Tools/Lucy.pm
Bio/Tools/MZEF.pm
Bio/Tools/OddCodes.pm
Bio/Tools/Prediction/Exon.pm
Bio/Tools/Prediction/Gene.pm
Bio/Tools/RestrictionEnzyme.pm
Bio/Tools/Run/Alignment/Clustalw.pm
Bio/Tools/Run/Alignment/TCoffee.pm
Bio/Tools/Run/EMBOSSApplication.pm
Bio/Tools/Run/RemoteBlast.pm
Bio/Tools/Run/StandAloneBlast.pm
Bio/Tools/SeqAnal.pm
Bio/Tools/SeqPattern.pm
Bio/Tools/SeqStats.pm
Bio/Tools/SeqWords.pm
Bio/Tools/Sigcleave.pm
Bio/Tools/Sim4/Exon.pm
Bio/Tools/Sim4/Results.pm
Bio/Tools/StateMachine/AbstractStateMachine.pm
Bio/Tools/StateMachine/IOStateMachine.pm
Bio/Tools/WWW.pm
Bio/Tools/pSW.pm
Bio/Tree/AlleleNode.pm
Bio/Tree/Node.pm
Bio/Tree/NodeI.pm
Bio/Tree/RandomFactory.pm
Bio/Tree/Statistics.pm
Bio/Tree/Tree.pm
Bio/Tree/TreeI.pm
Bio/TreeIO.pm
Bio/TreeIO/TreeEventBuilder.pm
Bio/TreeIO/newick.pm
Bio/UpdateableSeqI.pm
Bio/Variation/AAChange.pm
Bio/Variation/AAReverseMutate.pm
Bio/Variation/Allele.pm
Bio/Variation/DNAMutation.pm
Bio/Variation/IO.pm
Bio/Variation/IO/flat.pm
Bio/Variation/IO/xml.pm
Bio/Variation/README
Bio/Variation/RNAChange.pm
Bio/Variation/SeqDiff.pm
Bio/Variation/VariantI.pm
Changes
FAQ
INSTALL
LICENSE
MANIFEST
PLATFORMS
README
biodatabases.pod
biodesign.pod
bioperl.pod
bptutorial.pl
examples/aligntutorial.pl
examples/biblio.pl
examples/biblio_soap.pl
examples/blast/blast_config.pl
examples/blast/blast_seq.pl
examples/blast/example.table1
examples/blast/example.table2
examples/blast/html.pl
examples/blast/out/BioWorkbench/blastn.txt.gz
examples/blast/out/BioWorkbench/blastp.txt.gz
examples/blast/out/BioWorkbench/blastx.txt.gz
examples/blast/out/BioWorkbench/tblastn.txt.gz
examples/blast/out/BioWorkbench/tblastx.txt.gz
examples/blast/out/EMBL/blastn.txt.gz
examples/blast/out/EMBL/blastp.txt.gz
examples/blast/out/EMBL/blastx.txt.gz
examples/blast/out/EMBL/tblastx.txt.gz
examples/blast/out/NCBI/blastn.txt.gz
examples/blast/out/NCBI/blastp.txt.gz
examples/blast/out/NCBI/blastx.txt.gz
examples/blast/out/NCBI/tblastn.txt.gz
examples/blast/out/NCBI/tblastx.txt.gz
examples/blast/out/WUBlast/blastn.txt.gz
examples/blast/out/WUBlast/blastp.txt.gz
examples/blast/out/WUBlast/blastx.txt.gz
examples/blast/out/WUBlast/tblastn.txt.gz
examples/blast/out/WUBlast/tblastx.txt.gz
examples/blast/out/blastn.2.gz
examples/blast/out/blastn.2.wu.gz
examples/blast/out/blastp.1.gcg.gz
examples/blast/out/blastp.1.gz
examples/blast/out/blastp.2.gz
examples/blast/out/blastp.2.nogap.gz
examples/blast/out/blastp.2.wu
examples/blast/out/blastp.205.gz
examples/blast/out/blastp.2a.gz
examples/blast/out/blastp.2b.gz
examples/blast/out/blastp.email.html.gz
examples/blast/out/blastx.2
examples/blast/out/blastx.2.email.gz
examples/blast/out/blastx.208.gz
examples/blast/out/tblastn.206.out.gz
examples/blast/parse_blast.pl
examples/blast/parse_blast2.pl
examples/blast/parse_multi.pl
examples/blast/parse_positions.pl
examples/blast/print_blasts.pl
examples/blast/retrieve_blast.pl
examples/blast/run_blast_remote.pl
examples/blast/seq/acc1.dna.fasta
examples/blast/seq/seqs.fasta
examples/blast/seq/yal011w.dna.fasta
examples/blast/seq/yel009c.fasta
examples/blast/seq/ymr284w.fasta
examples/blosum62.bla
examples/change_gene.pl
examples/clustalw.pl
examples/exceptions/Bio/PrimarySeq.pm
examples/exceptions/Bio/PrimarySeqI.pm
examples/exceptions/Bio/Seq.pm
examples/exceptions/Bio/SeqI.pm
examples/exceptions/Error-0.13.tar.gz
examples/exceptions/Error.pm
examples/exceptions/README
examples/exceptions/TestInterface.pm
examples/exceptions/TestObject.pm
examples/exceptions/test1.pl
examples/exceptions/test2.pl
examples/exceptions/test3.pl
examples/exceptions/test4.pl
examples/getGenBank.pl
examples/gon250.bla
examples/gsequence
examples/hitdisplay.pl
examples/psw.pl
examples/remote_blast.pl
examples/restriction.pl
examples/rev_and_trans.pl
examples/root_object/Bar.pm
examples/root_object/Foo.pm
examples/root_object/Outer.pm
examples/root_object/destroy.pl
examples/root_object/error.out
examples/root_object/error.pl
examples/root_object/filehandle.out
examples/root_object/filehandle.pl
examples/root_object/io.out
examples/root_object/io.pl
examples/root_object/read.pl
examples/root_object/read.test
examples/root_object/read.test2
examples/root_object/read.test3
examples/root_object/utilities.pl
examples/root_object/vector/Person.pm
examples/root_object/vector/PersonManager.pm
examples/root_object/vector/vector.out
examples/root_object/vector/vector.pl
examples/run_genscan.pl
examples/searchio/psiblast_features.pl
examples/searchio/writer/custom_writer.pl
examples/searchio/writer/hitwriter.pl
examples/searchio/writer/hitwriter2.pl
examples/searchio/writer/hitwriter3.pl
examples/searchio/writer/hspwriter.pl
examples/searchio/writer/rawwriter.pl
examples/searchio/writer/resultwriter.pl
examples/seq/id.list
examples/seq/seq.fasta.gz
examples/seq/seq1.fasta
examples/seq/seq2.fasta
examples/seq/seqs1.pl
examples/seq/seqs2.pl
examples/seq/seqs3.pl
examples/seq/seqtools.pl
examples/seq_pattern.pl
examples/simplealign.pl
examples/standaloneblast.pl
examples/state-machine.pl
examples/structure/struct_example1.pl
examples/structure/struct_example2.pl
examples/test-genscan.pl
examples/use_registry.pl
models/README
models/biblio.dia
models/bio_liveseq_variation.dia
models/bio_map.dia
models/bioperl.dia
models/map_proposal.txt
models/maps_and_markers.dia
models/population_proposal.txt
scripts/Bio-DB-GFF/bulk_load_gff.pl
scripts/Bio-DB-GFF/gadfly_to_gff.pl
scripts/Bio-DB-GFF/load_gff.pl
scripts/Bio-DB-GFF/sgd_to_gff.pl
scripts/DB/dbfetch
scripts/DB/flanks.pl
scripts/align_on_codons.pl
scripts/bioperl.pl
scripts/blast_fetch.pl
scripts/blast_fetch_local.pl
scripts/bpfetch.pl
scripts/bpindex.pl
scripts/contributed/README
scripts/contributed/expression_analysis/README
scripts/contributed/expression_analysis/cat.pl
scripts/contributed/expression_analysis/ds.pl
scripts/contributed/expression_analysis/entropy.pl
scripts/contributed/expression_analysis/info.pl
scripts/contributed/expression_analysis/loocv_cat.pl
scripts/contributed/expression_analysis/loocv_ds.pl
scripts/contributed/expression_analysis/loocv_info.pl
scripts/contributed/expression_analysis/loocv_t.pl
scripts/contributed/expression_analysis/loocv_t_cc.pl
scripts/contributed/expression_analysis/loocv_u.pl
scripts/contributed/expression_analysis/loocv_u_rank.pl
scripts/contributed/expression_analysis/relation.pl
scripts/contributed/expression_analysis/relrand.pl
scripts/contributed/expression_analysis/t_test.pl
scripts/contributed/expression_analysis/u_test.pl
scripts/contributed/revcom_dir.README
scripts/contributed/revcom_dir.pl
scripts/das/das_server
scripts/est_tissue_query.pl
scripts/feature_draw.pl
scripts/gb_to_gff.pl
scripts/generate_random_seq.pl
scripts/get_seqs.pl
scripts/gff2ps.pl
scripts/make_mrna_protein.pl
scripts/make_primers.pl
scripts/prosite2perl.pl
scripts/render_sequence.pl
scripts/rfetch.pl
scripts/seqstats/aacomp.pl
scripts/seqstats/chaos_plot.pl
scripts/seqstats/gccalc.pl
scripts/seqstats/oligo_count.pl
scripts/structure/nmrpdb_parse.pl
scripts/subsequence.cgi
scripts/tree/paup2phylip.pl
t/AAChange.t
t/AAReverseMutate.t
t/AlignIO.t
t/Allele.t
t/Alphabet.t
t/Annotation.t
t/BPbl2seq.t
t/BPlite.t
t/BPpsilite.t
t/Biblio.t
t/BiblioReferences.t
t/Biblio_biofetch.t
t/BioDBGFF.t
t/BioFetch_DB.t
t/BioGraphics.t
t/BlastIndex.t
t/Chain.t
t/Clustalw.t
t/CodonTable.t
t/CytoMap.t
t/DB.t
t/DBFasta.t
t/DNAMutation.t
t/EMBL_DB.t
t/EMBOSS.t
t/Exception.t
t/GDB.t
t/GFF.t
t/Genpred.t
t/Index.t
t/LinkageMap.t
t/LiveSeq.t
t/LocatableSeq.t
t/Location.t
t/Map.t
t/MapIO.t
t/MicrosatelliteMarker.t
t/Mutation.t
t/Mutator.t
t/Node.t
t/OddCodes.t
t/Perl.t
t/PrimarySeq.t
t/RNAChange.t
t/RandomTreeFactory.t
t/Range.t
t/RangeI.t
t/RefSeq.t
t/RemoteBlast.t
t/RestrictionEnzyme.t
t/RootI.t
t/SearchDist.t
t/SearchIO.t
t/Seq.t
t/SeqAnal.t
t/SeqAnalysisParser.t
t/SeqDiff.t
t/SeqFeature.t
t/SeqIO.t
t/SeqPattern.t
t/SeqStats.t
t/SeqUtils.t
t/Sigcleave.t
t/Sim4.t
t/SimilarityPair.t
t/SimpleAlign.t
t/Species.t
t/StandAloneBlast.t
t/StateMachine.t
t/StructIO.t
t/Structure.t
t/Swiss.t
t/Symbol.t
t/TCoffee.t
t/Tempfile.t
t/Test.pm
t/Tools.t
t/TreeIO.t
t/Variation_IO.t
t/XEMBL_DB.t
t/consed.t
t/data/5X_1895.FASTXY
t/data/AAC12660.fa
t/data/AE003528_ecoli.bls
t/data/AF165282.gb
t/data/HUMBETGLOA.FASTA
t/data/HUMBETGLOA.fa
t/data/HUMBETGLOA.gff
t/data/HUMBETGLOA.grail
t/data/HUMBETGLOA.grailexp
t/data/HUMBETGLOA.mzef
t/data/HUMBETGLOA.tblastx
t/data/L77119.hmmer
t/data/LOAD_Ccd1.dnd
t/data/SwissProt.dat
t/data/a_thaliana.blastn
t/data/acefile.ace.1
t/data/acefile.singlets
t/data/alnfile.fasta
t/data/amino.fa
t/data/ar.embl
t/data/biodbgff/test.gff
t/data/biographics/feature_data.txt
t/data/biographics/t1.gif
t/data/biographics/t1.png
t/data/biographics/t2.gif
t/data/biographics/t2.png
t/data/biographics/t3.gif
t/data/biographics/t3.png
t/data/bl2seq.bug940.out
t/data/bl2seq.out
t/data/blast.report
t/data/chad100.scf
t/data/consed_project/edit_dir/test_project.contigs
t/data/consed_project/edit_dir/test_project.fasta
t/data/consed_project/edit_dir/test_project.fasta.log
t/data/consed_project/edit_dir/test_project.fasta.screen
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