Changes
MANIFEST
Makefile.PL
PLATFORMS
README
bioback.pod
biodesign.pod
bioperl.pod
biostart.pod
Bio/Annotation.pm
Bio/Annotation/Comment.pm
Bio/Annotation/DBLink.pm
Bio/Annotation/Reference.pm
Bio/DB/Ace.pm
Bio/DB/GenBank.pm
Bio/DB/GenPept.pm
Bio/DB/RandomAccessI.pm
Bio/DB/SeqI.pm
Bio/Index/Abstract.pm
Bio/Index/AbstractSeq.pm
Bio/Index/EMBL.pm
Bio/Index/Fasta.pm
Bio/Index/SwissPfam.pm
Bio/LocatableSeq.pm
Bio/PrimarySeq.pm
Bio/PrimarySeqI.pm
Bio/Range.pm
Bio/RangeI.pm
Bio/Root/Err.pm
Bio/Root/Global.pm
Bio/Root/IOManager.pm
Bio/Root/Object.pm
Bio/Root/RootI.pm
Bio/Root/Utilities.pm
Bio/Root/Vector.pm
Bio/Root/Xref.pm
Bio/Search/Hit/Fasta.pm
Bio/Search/Hit/HitI.pm
Bio/Search/Processor.pm
Bio/Search/Processor/Fasta.pm
Bio/Search/Processor/ProcessorI.pm
Bio/Search/Result/Fasta.pm
Bio/Search/Result/ResultI.pm
Bio/SearchDist.pm
Bio/Seq.pm
Bio/SeqFeature/FeaturePair.pm
Bio/SeqFeature/Generic.pm
Bio/SeqFeatureI.pm
Bio/SeqI.pm
Bio/SeqIO.pm
Bio/SeqIO/FTHelper.pm
Bio/SeqIO/MultiFile.pm
Bio/SeqIO/embl.pm
Bio/SeqIO/fasta.pm
Bio/SeqIO/gcg.pm
Bio/SeqIO/genbank.pm
Bio/SeqIO/pir.pm
Bio/SeqIO/raw.pm
Bio/SeqIO/scf.pm
Bio/SeqIO/swiss.pm
Bio/SimpleAlign.pm
Bio/Species.pm
Bio/Tools/AlignFactory.pm
Bio/Tools/Blast.pm
Bio/Tools/Blast/CHANGES
Bio/Tools/Blast/HSP.pm
Bio/Tools/Blast/HTML.pm
Bio/Tools/Blast/README
Bio/Tools/Blast/Run/LocalBlast.pm
Bio/Tools/Blast/Run/Makefile.PL
Bio/Tools/Blast/Run/Webblast.pm
Bio/Tools/Blast/Run/postclient.pl
Bio/Tools/Blast/Sbjct.pm
Bio/Tools/CodonTable.pm
Bio/Tools/Fasta.pm
Bio/Tools/HMMER/Domain.pm
Bio/Tools/HMMER/Results.pm
Bio/Tools/HMMER/Set.pm
Bio/Tools/IUPAC.pm
Bio/Tools/RestrictionEnzyme.pm
Bio/Tools/SeqAnal.pm
Bio/Tools/SeqPattern.pm
Bio/Tools/SeqStats.pm
Bio/Tools/SeqWords.pm
Bio/Tools/Sigcleave.pm
Bio/Tools/WWW.pm
Bio/Tools/pSW.pm
Bio/UnivAln.pm
examples/blast/blast_config.pl
examples/blast/blast_seq.pl
examples/blast/example.table1
examples/blast/example.table2
examples/blast/html.pl
examples/blast/out/blastn.2.gz
examples/blast/out/blastn.2.wu.gz
examples/blast/out/blastp.1.gcg.gz
examples/blast/out/blastp.1.gz
examples/blast/out/blastp.2.gz
examples/blast/out/blastp.2.nogap.gz
examples/blast/out/blastp.2.wu
examples/blast/out/blastp.205.gz
examples/blast/out/blastp.2a.gz
examples/blast/out/blastp.2b.gz
examples/blast/out/blastp.email.html.gz
examples/blast/out/blastx.2
examples/blast/out/blastx.2.email.gz
examples/blast/out/blastx.208.gz
examples/blast/out/tblastn.206.out.gz
examples/blast/parse_blast.pl
examples/blast/parse_blast2.pl
examples/blast/parse_multi.pl
examples/blast/parse_positions.pl
examples/blast/print_blasts.pl
examples/blast/retrieve_blast.pl
examples/blast/run_blast_remote.pl
examples/blast/seq/acc1.dna.fasta
examples/blast/seq/seqs.fasta
examples/blast/seq/yal011w.dna.fasta
examples/blast/seq/yel009c.fasta
examples/blast/seq/ymr284w.fasta
examples/blosum62.bla
examples/gon250.bla
examples/psw.pl
examples/restriction.pl
examples/rev_and_trans.pl
examples/root_object/Bar.pm
examples/root_object/Foo.pm
examples/root_object/Outer.pm
examples/root_object/destroy.pl
examples/root_object/error.out
examples/root_object/error.pl
examples/root_object/filehandle.out
examples/root_object/filehandle.pl
examples/root_object/io.out
examples/root_object/io.pl
examples/root_object/read.pl
examples/root_object/read.test
examples/root_object/read.test2
examples/root_object/read.test3
examples/root_object/utilities.pl
examples/root_object/vector/Person.pm
examples/root_object/vector/PersonManager.pm
examples/root_object/vector/vector.out
examples/root_object/vector/vector.pl
examples/seq/id.list
examples/seq/seq.fasta.gz
examples/seq/seq1.fasta
examples/seq/seq2.fasta
examples/seq/seqs1.pl
examples/seq/seqs2.pl
examples/seq/seqs3.pl
examples/seq/seqtools.pl
examples/seq_pattern.pl
examples/simplealign.pl
scripts/bpfetch.pl
scripts/bpindex.pl
t/Annotation.t
t/Blast.t
t/CodonTable.t
t/DB.t
t/HSP.t
t/HTML.t
t/Index.t
t/PrimarySeq.t
t/Range.t
t/RangeI.t
t/RestrictionEnzyme.t
t/Sbjct.t
t/Seq.t
t/SeqAnal.t
t/SeqFeature.t
t/SeqIO.t
t/Sigcleave.t
t/SimpleAlign.t
t/Tools.t
t/UnivAln.t
t/WWW.t
t/blast.report
t/exception.t
t/expected.blast.out
t/hmmer.t
t/hmmpfam.out
t/hmmsearch.out
t/multi_1.fa
t/multi_2.fa
t/multifa.seq
t/roa1.dat
t/roa1.genbank
t/roa1.swiss
t/seq.xml
t/seqs.fas
t/sim4.for.for
t/sim4.for.rev
t/sim4.rev
t/swisspfam.data
t/test.fasta
t/test.gcg
t/test.genbank
t/test.mase
t/test.pfam
t/test.raw