• bptutorial
• INSTALL
• INSTALL.WIN
• README
• bioperl.pod
• biodesign.pod
• biodatabases.pod
• bioscripts.pod
• FAQ
• PLATFORMS
• AUTHORS
• DEPRECATED
• LICENSE

Contributed Bioperl Course

http://www.pasteur.fr/recherche/unites/sis/formation/bioperl

Complete Module Documentation

http://doc.bioperl.org/releases/bioperl-1.4

HOWTO Documentation

• Beginners HOWTO: An Introduction to Bioperl
  [DocBook XML] [HTML] [PDF] [TEXT]
• SearchIO HOWTO: Explanation of the SearchIO system
  [DocBook XML] [HTML] [PDF] [TEXT]
• Graphics HOWTO: Explanation of Bio-Graphics
  [DocBook XML] [HTML] [PDF] [TEXT]
• SeqIO HOWTO: Explanation of the SeqIO system
  [Docbook XML] [HTML] [PDF] [TEXT]
• OBDA Access HOWTO: Explanation of the OBDA system
  [Docbook XML] [HTML] [PDF] [TEXT]
• Biopipe introduction HOWTO: Explanation of the biopipe system
  [DocBook XML] [HTML] [PDF]
• PAML HOWTO
  [Docbook XML] [HTML] [PDF] [TEXT]
• PopGen/Perlymorphism HOWTO
  [Docbook XML] [HTML] [PDF] [TEXT]
• Trees HOWTO: Phylogenetic trees
  [Docbook XML] [HTML] [PDF] [TEXT]
• SimpleWebAnalysis HOWTO
  [Docbook XML] [HTML] [PDF] [TEXT]
• Flat Databases HOWTO: Indexed Flat Files
  [Docbook XML] [HTML] [PDF] [TEXT]
• Feature-Annotation HOWTO: About Sequence Features and Annotations
  [Docbook XML] [HTML] [PDF] [TEXT]

User Contributed Documentation

• Bioperl Tutorials
• Introduction to Bioperl
• Installing Bioperl on MacOS X
• Installing Bioperl on Windows, Perl 5.6, PPM
• Installing Bioperl on Windows, Perl 5.8, PPM

Version 1.0 Class Diagrams (PDF) and Original DIA files

• Bioperl Class Diagram
• LiveSeq and Variation Diagram
• Map and Population objects proposal Diagram
• Bioperl Bibliographic objects